Protein Alignment RfC38 and RfC3

DIOPT Version :10

• Sequence 1: NP_609494.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_609399.1
• Gene: RfC3 / 34423
• FlyBaseID: FBgn0032244
• Length: 332
• Species: Drosophila melanogaster
• Alignment Length: 360
• Identity: 94/360 - (26%)
• Similarity: 154/360 - (42%)
• Gaps: 75/360 - (20%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||..|..|..|::....:.....:...|||:||||.|.||.:.|:...|::|
  Fly    13 WVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLY-------- 69

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDR--TVVIDLIKQVAQTHQIEISGQREFKV 131
                   :|...|..|        ||:|.||    ||  .:|...|...|.|..|...   .||:
  Fly    70 -------SPQQFKSMV--------LELNASD----DRGIGIVRGQILNFASTRTIFCD---TFKL 112

  Fly   132 IVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSIL 196
            |::.|.|.:|.|||:||||.:|||....|..:..|..|:||||::|||...|.|..::.:::..|
  Fly   113 IILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRL 177

  Fly   197 QNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPF-TANQEIPDLDWQVF------ 254
            :...:.|.:.:..:..:.::..::.::|:.|.:|::..:|   | |.|::      .|:
  Fly   178 EKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMA---FDTVNED------NVYMCVGYP 233

  Fly   255 LRETASQII-----SEQTPAKLEKIRERLYELLTQGVPPNLIFRGL-VEQLVN---------NCD 304
            ||:...||:     ........:.:....|.            ||| :|.::.         ...
  Fly   234 LRQDIEQILKALLSGSSLEDSFKTVESAKYA------------RGLALEDIITELHLFVMRLELP 286

  Fly   305 MSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQF 339
            ||:..|.:....:.|.|:..|...:....|.||.|
  Fly   287 MSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAF 321

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_609494.1	rfc	3..345	CDD:234763	94/360 (26%)
RfC3	NP_609399.1	rfc	12..321	CDD:234763	93/358 (26%)