Protein Alignment RfC38 and Rfc5

DIOPT Version :10

• Sequence 1: NP_609494.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_001100616.1
• Gene: Rfc5 / 304528
• RGDID: 1309280
• Length: 338
• Species: Rattus norvegicus
• Alignment Length: 363
• Identity: 100/363 - (27%)
• Similarity: 163/363 - (44%)
• Gaps: 82/363 - (22%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY-----GSG 63
            ||:||||:.|:.|..|:|....::....:...|||:.|||.|.||.:.|:...:::|     ||.
  Rat    20 WVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSM 84

  Fly    64 VERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIK----QVAQTHQIEIS 124
            |                            ||:|.||    ||.  ||:::    ..|.|..|
  Rat    85 V----------------------------LELNASD----DRG--IDIVRGPILSFASTRTI--- 112

  Fly   125 GQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNE 189
            .:|.||::::.|.|.:|:|||:||||.:||:....|..:..|..|:||||::|||...|......
  Rat   113 FKRGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTP 177

  Fly   190 TEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFT-----------AN 243
            ..:|..|::..:.|.:.:..:..|.:|..|..::||||.:|::..:|....|           ..
  Rat   178 ELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLK 242

  Fly   244 QEIPD-LDW---QVFLRETASQIISEQTPAKLEKIRE-RLYELLTQGVPPNLIFRGLVEQLVNNC 303
            .:|.: |||   |.|  .||.:.|.|     |:.::. .|:::||:           |...|:..
  Rat   243 TDIANILDWMLNQDF--TTAYKNIME-----LKTLKGLALHDILTE-----------VHLFVHRV 289

  Fly   304 DM--SIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQF 339
            |.  |::...|....:.|:|:..|......|.:.:|.|
  Rat   290 DFPSSVRMHLLTKMADIEYRLSVGTSEKIQLSSLIAAF 327

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_609494.1	rfc	3..345	CDD:234763	100/363 (28%)
Rfc5	NP_001100616.1	rfc	16..327	CDD:234763	99/361 (27%)