Protein Alignment RfC38 and Rfc4

DIOPT Version :10

• Sequence 1: NP_609494.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_001099339.1
• Gene: Rfc4 / 288003
• RGDID: 1310142
• Length: 364
• Species: Rattus norvegicus
• Alignment Length: 352
• Identity: 98/352 - (27%)
• Similarity: 161/352 - (45%)
• Gaps: 49/352 - (13%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||:.:.::.|.::....|:...:.:|.|:|:||||.|.||.:.|:...||::|..:.|||
  Rat    40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 104

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSD-AGMYDRTVVIDLIKQVAQTHQIEISGQRE---- 128
            .                       ||:|.|| .|:   .||.:.:|..|   |:.:||.|.
  Rat   105 V-----------------------LELNASDERGI---QVVREKVKNFA---QLTVSGSRSDGKP 140

  Fly   129 ---FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNET 190
               ||::::.|.|.:|..||.||||||||...|.|..:..|..||||..:.|||...|....::.
  Rat   141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205

  Fly   191 EIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQE-----IPDLD 250
            .....|.:..::|.:.:..|....:|..||.:||:|:..|::|    ...|..:|     |.|:.
  Rat   206 IQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSA----TRLTGGKEISEDVITDIA 266

  Fly   251 WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTL--E 313
             .|....|...|::.......:|:...|..|:.:|.....:...|.:.::.:.::|.|.|::  |
  Rat   267 -GVIPAATIEGIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITE 330

  Fly   314 FATEYEHRMQSGAKHIFHLEAFVAQFM 340
            ...|.:..:..||.....|.:..|..|
  Rat   331 KLAEVDKCLADGADEHLQLMSLCATVM 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_609494.1	rfc	3..345	CDD:234763	98/352 (28%)
Rfc4	NP_001099339.1	rfc	39..354	CDD:234763	96/347 (28%)