Protein Alignment RfC38 and rfc3

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_958865.1
• Gene: rfc3 / 259256
• ZFINID: ZDB-GENE-020809-3
• Length: 356
• Species: Danio rerio
• Alignment Length: 349
• Identity: 212/349 - (60%)
• Similarity: 280/349 - (80%)
• Gaps: 0/349 - (0%)

  Fly     1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVE 65
            |:||||||||..|:|||:||:||..|:||.:..|||||:.||||||||||||||||||:||:|||
Zfish     1 MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYGAGVE 65

  Fly    66 RLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFK 130
            :||.|..:.||||.:|:|:.|::|||||||||||||..||.|:.:|||.|||:.||:.|.|||||
Zfish    66 KLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFK 130

  Fly   131 VIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSI 195
            |::::|.|.||||||||||||||||:||||:|:..||||::|..||||||.:||..|:..|:.|:
Zfish   131 VVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLAVRVPLPSVEEVCSV 195

  Fly   196 LQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETAS 260
            |...|::|||.||.||||::.:||.||||:||||.||.:|.:.||:.:|:||:.||:|:|||||:
Zfish   196 LSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPFSPDQDIPETDWEVYLRETAN 260

  Fly   261 QIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHRMQSG 325
            .|:|:|:|.:|.::|.|||||||..:.|.:|.:|||.:|::|||..:||:..:.|..||||:|.|
Zfish   261 AIVSQQSPQRLLEVRARLYELLTHCISPEVIMKGLVTELLSNCDGHLKAEVAQMAAYYEHRLQLG 325

  Fly   326 AKHIFHLEAFVAQFMNIYKKFLSE 349
            .|.|:|||||||:||.|||||:.:
Zfish   326 NKAIYHLEAFVAKFMAIYKKFMED 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	208/341 (61%)
rfc3	NP_958865.1	rfc	3..345	CDD:234763	208/341 (61%)
		AAA	21..179	CDD:99707	105/157 (67%)
		Rep_fac_C	250..337	CDD:285713	46/86 (53%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170580839
Domainoid	1	1.000	232	1.000	Domainoid score	I2353
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2188
Inparanoid	1	1.050	453	1.000	Inparanoid score	I1574
OMA	1	1.010	-	-		QHG53642
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0004648
OrthoInspector	1	1.000	-	-		oto38670
orthoMCL	1	0.900	-	-		OOG6_102480
Panther	1	1.100	-	-	LDO	PTHR11669
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1091
SonicParanoid	1	1.000	-	-		X3265
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	15	14.940