DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC38 and Rad17

DIOPT Version :10

Sequence 1:NP_609494.1 Gene:RfC38 / 34550 FlyBaseID:FBgn0028700 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_035363.2 Gene:Rad17 / 19356 MGIID:1333807 Length:688 Species:Mus musculus


Alignment Length:397 Identity:78/397 - (19%)
Similarity:153/397 - (38%) Gaps:96/397 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCK--------QSDFPHLMFYGPSGAGKKTRIMCLLREMY 60
            |||||:|....:|..||.:.|.:....|        :.....|:..||.|.||.|.|..|.:|: 
Mouse    90 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTIKILSKEL- 153

  Fly    61 GSGVERLRSETMTFTTPSNRK---VEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIE 122
              |::  ..|.:....|..:|   .|::::.||:.:....|...:::     |.:.:..:..:::
Mouse   154 --GIQ--VQEWVNPILPDFQKDDYKELLSLESNFSVVPYQSQIAVFN-----DFLLRATKYSKLQ 209

  Fly   123 ISGQ---REFKVIVISE-GDELTKDAQHALRRTMEKYV--ATCRIIISVN--------------- 166
            :.|.   .:.|:|::.| .::..:| .:||...:.|:|  ..|.::..|:               
Mouse   210 MLGDDLTTDKKIILVEELPNQFYRD-PNALHEILRKHVQIGRCPLVFIVSDSVSGDNNQRLLFPR 273

  Fly   167 -----------STSRIIPAIRSRCL-----------GIRVAAPNETEIVSILQNTCKRE--GLAL 207
                       |.:.:.|.|..:.|           |.::..||:|.:..:.|. |..:  ....
Mouse   274 NIQEECSVSNISFNPVAPTIMMKFLNRIVTIEASKNGEKIIVPNKTSLELLCQG-CSGDIRSAIN 337

  Fly   208 PVELAKRVVDKSERNLRRALLMLEAAKVAKA-------PFTANQEIPDL---DWQVFL------- 255
            .::.:....:.|..:.::.:.:...|.::|:       ....||||..:   |..:||       
Mouse   338 SLQFSSSKGENSSWSKKKRMSLKSDAAISKSKQKKKHNSTLENQEIQAIGGKDVSLFLFRALGKI 402

  Fly   256 ----RETASQIISEQTPAKL-EKIRERLY----ELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKT 311
                |...:::.|.:.||.| |..|:.|.    |::.....|...|...:.|  |..|...:...
Mouse   403 LYCKRAPLTELDSPRLPAHLSEHDRDTLLVQPEEIVEMSHMPGDFFNLYLHQ--NYIDFFAEVDD 465

  Fly   312 LEFATEY 318
            |..|:|:
Mouse   466 LVPASEF 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC38NP_609494.1 rfc 3..345 CDD:234763 78/397 (20%)
Rad17NP_035363.2 rad24 13..653 CDD:129690 78/397 (20%)
RAD1-binding motif. /evidence=ECO:0000250|UniProtKB:O75943 17..25
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..84
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 342..379 3/36 (8%)
Interaction with MCM7. /evidence=ECO:0000250|UniProtKB:O75943 431..688 9/44 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 605..688
Blue background indicates that the domain is not in the aligned region.

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