DRSC/TRiP Functional Genomics Resources

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Protein Alignment RfC38 and rfc-1

DIOPT Version :10

Sequence 1:NP_609494.1 Gene:RfC38 / 34550 FlyBaseID:FBgn0028700 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_001256606.1 Gene:rfc-1 / 179967 WormBaseID:WBGene00004337 Length:839 Species:Caenorhabditis elegans


Alignment Length:434 Identity:77/434 - (17%)
Similarity:146/434 - (33%) Gaps:152/434 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WVDKYRPRELSK--------------LDFHKDQAE-NLRNLCK--------------QSDFPHLM 39
            |||||:|:.:.:              |::.||.|: ||....|              .:.|...:
 Worm   280 WVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWMSSQDGTSFKAAL 344

  Fly    40 FYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYD 104
            ..|..|.||.|   |........|::.:             ::....|.|..|||..        
 Worm   345 LSGSPGVGKTT---CAYMACQQLGLQLV-------------EMNASDVRSKKHLEAK-------- 385

  Fly   105 RTVVIDLIKQVAQTHQIE----------ISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATC 159
                   |.:::.:||||          ...|:...::::.|.|.::.:...|....:.:.:...
 Worm   386 -------IGELSGSHQIEQFFGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKES 443

  Fly   160 RIIISVNSTSRIIPAIR---SRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSER 221
            :|.|......|..|.||   :.|..:|...|....|.|.:...|.:|.:.:..|....:::.|..
 Worm   444 KIPIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIELSGH 508

  Fly   222 NLRRALLMLE------AAKV-----AKAPFTANQEIPDLDWQVFLRETASQIISE---------- 265
            ::|:.:..|:      .||:     |...|:|.:.:  ||.:..|.|......::          
 Worm   509 DVRQTIYNLQMRSKGVGAKINQKDMAVDAFSAARRL--LDSRTTLMEKQEMFFTDYGIMPLFVQD 571

  Fly   266 -------QTPAKLEKIR-------------------------ERLYE--LLTQGVP--------- 287
                   :..:.::.||                         :.|.|  :::..:|         
 Worm   572 NYLNMKNEKHSPIQAIRGIRKAADFISLGDLIDRQIRGGGSWKLLNEQSMISAALPAIATGGHLK 636

  Fly   288 -----PNLIFRG--------LVEQLVNNCDMSIKAKTLEFATEY 318
                 |:.:.:.        |::|||.:..:.:.|.|..|||:|
 Worm   637 AMIQFPSWLGKNSTAGKRKRLLQQLVQHTHLKVSAGTHSFATDY 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfC38NP_609494.1 rfc 3..345 CDD:234763 77/434 (18%)
rfc-1NP_001256606.1 PTZ00121 <4..>245 CDD:173412
PRK04195 277..805 CDD:235250 77/434 (18%)
RFC1 597..750 CDD:462507 14/84 (17%)
Blue background indicates that the domain is not in the aligned region.

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