Protein Alignment RfC38 and rfc-3

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_502517.1
• Gene: rfc-3 / 178259
• WormBaseID: WBGene00004339
• Length: 354
• Species: Caenorhabditis elegans
• Alignment Length: 347
• Identity: 176/347 - (50%)
• Similarity: 245/347 - (70%)
• Gaps: 5/347 - (1%)

  Fly     1 MALWVDKYRPREL---SKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGS 62
            ||||||||||::|   ..:|:|.:||.:|:.|.... .|||:|.|||||||||||.|||||:||.
 Worm     1 MALWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLRELYGV 64

  Fly    63 GVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQR 127
            |||:.:....:||:|||:|:|:.|||||||:|:.|||.|:|||.||.||:|::|||.|||.:.||
 Worm    65 GVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIESTSQR 129

  Fly   128 EFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEI 192
            .|||:|:.|.|.||:||||.||||||||...|:|::|..|.||||..::|||:.|.|.||.:.::
 Worm   130 SFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAPTDEDV 194

  Fly   193 VSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQ-EIPDLDWQVFLR 256
            ..:|:...:||...||..:.:::|:|||.|||||:||.||.::......|.. .||..:|:::::
 Worm   195 TKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTEALRMENESGVAESVVIPVPEWEIYIQ 259

  Fly   257 ETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHR 321
            |||..|:.:|:...|.|:||||||||::.:||.:||:.|:|.|:..|...|..:.:..|.::|||
 Worm   260 ETARLILQKQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSEAAKFEHR 324

  Fly   322 MQSGAKHIFHLEAFVAQFMNIY 343
            :..|.|.|||||.|||.||:||
 Worm   325 LVLGQKAIFHLEGFVAAFMDIY 346

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	174/345 (50%)
rfc-3	NP_502517.1	PRK12402	3..342	CDD:237090	170/339 (50%)
		AAA	38..187	CDD:99707	92/148 (62%)
		Rep_fac_C	253..340	CDD:285713	37/86 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160159425
Domainoid	1	1.000	192	1.000	Domainoid score	I1898
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2188
Inparanoid	1	1.050	353	1.000	Inparanoid score	I1325
Isobase	1	0.950	-	0	Normalized mean entropy	S603
OMA	1	1.010	-	-		QHG53642
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	1	1.000	-	-		FOG0004648
OrthoInspector	1	1.000	-	-		oto18016
orthoMCL	1	0.900	-	-		OOG6_102480
Panther	1	1.100	-	-	LDO	PTHR11669
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1091
SonicParanoid	1	1.000	-	-		X3265
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	17	16.790