Protein Alignment RfC38 and rfc-2

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_500069.1
• Gene: rfc-2 / 176946
• WormBaseID: WBGene00004338
• Length: 334
• Species: Caenorhabditis elegans
• Alignment Length: 354
• Identity: 91/354 - (25%)
• Similarity: 154/354 - (43%)
• Gaps: 78/354 - (22%)

  Fly     1 MALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVE 65
            :|.||:||||:.|:.:..:::..|.|:.:..:.:.|:::..||.|.||.|.:..|.||:.|..|:
 Worm     9 LAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVK 73

  Fly    66 RLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFK 130
                             |.:       ||:|.||....|  ||...||..|||......|:.  |
 Worm    74 -----------------EAV-------LELNASDERGID--VVRHRIKTFAQTKVTLPEGRH--K 110

  Fly   131 VIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSI 195
            :|::.|.|.:|..||.|||||||.|..|.|..::.|.:.:||..|:|||..:|....:..::::.
 Worm   111 IIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTR 175

  Fly   196 LQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAA-------------KVAKAP-------- 239
            ::...|.|.:.......:.::..::.::|:||..|:|.             ||...|
 Worm   176 VKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKM 240

  Fly   240 ---------FTANQEIPDLD-------------WQVFLRETASQIISEQTPAKLEKIRE--RLYE 280
                     |.|::.|.:..             ::|......|:.:|||  .::|.||:  ..:.
 Worm   241 LHYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQ--LRMEYIRQIAMCHM 303

  Fly   281 LLTQGVPPNLIFRGLVEQLVNNCDMSIKA 309
            .:.||:...|....|:..|   |.:|..|
 Worm   304 RIVQGLTSKLQLSRLIADL---CRVSAAA 329

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	90/352 (26%)
rfc-2	NP_500069.1	PLN03025	11..325	CDD:178596	88/346 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820