Protein Alignment RfC38 and rfc-4

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_498521.1
• Gene: rfc-4 / 175976
• WormBaseID: WBGene00004340
• Length: 334
• Species: Caenorhabditis elegans
• Alignment Length: 307
• Identity: 82/307 - (26%)
• Similarity: 141/307 - (45%)
• Gaps: 56/307 - (18%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            |.:||||:.|..:.:..:....|:...:..|.|||:||||.|.||.:..:...|:::
 Worm    17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLF-------- 73

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISG--QRE--- 128
                    |.|       :..:..|::|.||    :|.:.:  ::|..|:......|  .||
 Worm    74 --------PKN-------IFHDRVLDLNASD----ERGIAV--VRQKIQSFSKSSLGHSHREDVL 117

  Fly   129 -FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRV-AAPNETE 191
             .|:|::.|.|.:|::||.|:||.:|.:..|.|.|:..|..||:||.:.|||...|. :.|.|.:
 Worm   118 KLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQ 182

  Fly   192 IVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLR 256
             |..|:..|..||..:..:..|:|::.||.:||||:..|::.    ||...:.:  |.....:||
 Worm   183 -VQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSL----APILKSGD--DNARNCYLR 240

  Fly   257 ETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNC 303
            .::..::          |......:||..||..:   .|.:.:..:|
 Worm   241 GSSDSLL----------ISNVCKSILTADVPQII---ALTKDITKSC 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	82/307 (27%)
rfc-4	NP_498521.1	44	12..329	CDD:222866	82/307 (27%)
		AAA	32..169	CDD:99707	45/165 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820