Protein Alignment RfC38 and Rfc4

DIOPT Version :9

• Sequence 1: NP_001285833.1
• Gene: RfC38 / 34550
• FlyBaseID: FBgn0028700
• Length: 356
• Species: Drosophila melanogaster
• Sequence 2: NP_663455.1
• Gene: Rfc4 / 106344
• MGIID: 2146571
• Length: 364
• Species: Mus musculus
• Alignment Length: 349
• Identity: 97/349 - (27%)
• Similarity: 159/349 - (45%)
• Gaps: 43/349 - (12%)

  Fly     4 WVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLR 68
            ||:||||:.:.::.|..:....||...:.:|.|:|:||||.|.||.:.|:...||::|..:.|||
Mouse    40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 104

  Fly    69 SETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDR--TVVIDLIKQVAQTHQIEISGQRE--- 128
            .                       ||:|.||    :|  .||.:.:|..|   |:.:||.|.
Mouse   105 V-----------------------LELNASD----ERGIQVVREKVKNFA---QLTVSGSRSDGK 139

  Fly   129 ----FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNE 189
                ||::::.|.|.:|..||.||||||||...|.|..:..|..||||..:.|||...|....::
Mouse   140 PCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSD 204

  Fly   190 TEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAA-KVAKAPFTANQEIPDLDWQV 253
            ......|.:..::|.:.:..|....:|..||.:||:|:..|::| ::......:...|.|:. .|
Mouse   205 KIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA-GV 268

  Fly   254 FLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTL--EFAT 316
            ....|...|.:.......:|:...:..|:.:|.....:...|.:.::.|.::|.|.|::  |...
Mouse   269 IPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLA 333

  Fly   317 EYEHRMQSGAKHIFHLEAFVAQFM 340
            |.:..:..||.....|.:..|..|
Mouse   334 EVDKCLADGADEHLQLMSLCATVM 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RfC38	NP_001285833.1	rfc	3..345	CDD:234763	97/349 (28%)
Rfc4	NP_663455.1	rfc	39..354	CDD:234763	95/344 (28%)
		AAA	55..201	CDD:99707	59/175 (34%)
		AAA_assoc_2	217..>267	CDD:292811	12/50 (24%)
		Rep_fac_C	285..354	CDD:285713	13/68 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0470
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1071197at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820