DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)gd1 and cc2d1b

DIOPT Version :9

Sequence 1:NP_001245976.1 Gene:l(2)gd1 / 34543 FlyBaseID:FBgn0261983 Length:834 Species:Drosophila melanogaster
Sequence 2:XP_005171255.1 Gene:cc2d1b / 563720 ZFINID:ZDB-GENE-030131-1426 Length:859 Species:Danio rerio


Alignment Length:917 Identity:291/917 - (31%)
Similarity:460/917 - (50%) Gaps:148/917 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFSRKKPEPAKRRQHDLS---QFGLTEIPDDFDPSAGYGED-DGGDSDLEAELAAITGGEGAKPK 61
            ||:||....|..:....:   |.||..   ||.|......| |..|..||||.|||.   |.||.
Zfish     1 MFARKNKRAAAPKGQGAAAAKQMGLLL---DFKPDDMMDMDQDLDDPSLEAEFAAIV---GKKPN 59

  Fly    62 PKPKAKL-----LPASDLDKMIADSLRDVSDDDDDDNLESDPDLLGELSGIGGLEEAEE------ 115
            ...:||.     ||..|::||....::|. |||:|:::|.|.|||.||..:.|.||.::      
Zfish    60 VPTRAKKAGKAPLPMEDIEKMAEACMKDF-DDDEDESVEDDEDLLAELQEVVGEEETDDSGATTP 123

  Fly   116 ------EEPVAQPPAASEEPVQTFLPTTTVDTLSIIKQRLEMYKQAEANAKTAGDSGKARRFGRG 174
                  |.|....|.:.|..|.: :|.:...||   ::|:.:|:.|..|||.||::.||||:.||
Zfish   124 TFTVSAETPADATPESQETKVSS-VPGSIEHTL---EERISLYRMAVTNAKAAGETSKARRYERG 184

  Fly   175 LKTLKDLHRQAAAGKSINVDDIPPEVSV-KPIGGQAPPVPA---EESPAPSTPASPPPVPSRAAP 235
            ||||:.:......|..|:..:|||.|:. .|:|...||.||   :|.....:.....||.:.|||
Zfish   185 LKTLQTMLATVRKGGKIDESEIPPPVACGGPVGSSRPPAPAVSPDEQEECDSAVEISPVSAEAAP 249

  Fly   236 DPPTPGTPVEP----TTSVAPTSPP-------------------NPLVTQMRSRQTDYKAAALQS 277
            ......:.:..    .||.|..|.|                   .|....:..:|.:|:.|||::
Zfish   250 VVMDTESNIRDESSGVTSPASLSSPEGEHASSEAEKHLVDFPVGQPTKDTLLEQQKEYRMAALKA 314

  Fly   278 KRSGDISTALQFLKVVKQFDVVIKMCEDGQEVDLSDMPPPPAEFLEFLKKMQEEAAAEAVAEPTA 342
            |::|||..|...:|..|.||..|:..|.||.|::|.:|||                   :|:.|.
Zfish   315 KQAGDIDQAKMHIKASKGFDAAIEALEKGQPVNVSSLPPP-------------------LAQVTQ 360

  Fly   343 APEPTPVAPAPVLAAAT--------NMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYE 399
            ||..|.|..:|..:..|        .:||||:||:.||:.....|||..:..|||...||.|||.
Zfish   361 APPQTAVKVSPSPSGETASGPAQPNTVLEALEQRMAKYKEAFTQAKASGDERKARMHDRIAKQYH 425

  Fly   400 DAIKLYKAGKPVPYDELPVPPGFGPLPTADAAPVAPTPSLPTSP---------TSPPPTASTSAG 455
            .||:.:|||:||.|||||.||||.|:|...|          |||         |:...|::.:..
Zfish   426 AAIRAHKAGRPVNYDELPAPPGFPPIPGQKA----------TSPEQGLAAVLETANKLTSNEARD 480

  Fly   456 GTPSS----------SSATTPTAPRKAPSPPKPKELT---TRTSGNQQKNNIAEQQMKLLLERQK 507
            |....          |....||...: |:..:||:.|   .|||......:.|:||::.|..|:|
Zfish   481 GQDEDEEEEEKALNLSGQKKPTLVVQ-PTVQEPKQRTPSPDRTSKRGSLPDAAQQQLEFLEGRKK 544

  Fly   508 EFKLAAIEAKKAGEIDQAKEYLKIFKGFDSLLNAASSGLPVDLSTLPVPPSQRDNLEASFAIVSA 572
            ::..||::||:..:::|||.:|:..||.:.::.||.||..||:|.:|.||...|.   .|.:|..
Zfish   545 QYMKAALQAKQKKDLEQAKTFLRTAKGLEPMIEAARSGKTVDVSKVPSPPGDEDE---DFILVHH 606

  Fly   573 EECDPTDDICEIGVRMEEQLAKQLMMCKNTRDHHKAMGDVAGMNRFENLALTVQKDLDLVRYSKR 637
            .:...::...|:..::.:.|.:|...|.........:|:||...:|||:|...:|.|::::.::.
Zfish   607 SDVQLSEKAEEVYTQLNKLLNEQHEKCVTYSKQFTHLGNVAETTKFENMAEKCKKSLEILKLAQN 671

  Fly   638 KNEPLPKFHYEKRSFNIVHCNTDLTDSELEIVVVRGISYNVANP-----KDVDTYVRVEFPLLND 697
            :....||.|:|:|::..|....:|:.:::.:|:|:|:  |:..|     .|:|.||:.:||..:.
Zfish   672 RGLQPPKHHFEERTYRTVRIFPELSSTDMVVVIVKGM--NLPAPSGVATNDLDAYVKFDFPYPSS 734

  Fly   698 ES-FKTKTNVIRDTSSPDYDERFKVDIQRTNRQFQRIFKRHGVKFEIYSRGCSIDCCGLSRKLPL 761
            |. .|.||.|:::|::|:|::.||::|.|.:|.|:|:.:..|:|.|:..:|              
Zfish   735 EQPQKHKTAVVKNTNNPEYNQSFKLNINRNHRGFRRVIQSKGLKLEVLHKG-------------- 785

  Fly   762 CCFRGFLRSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEVKIRVRNPILTKQMEHIT 826
                ||||||..:|:..:||:.||.:.|:.:..:||||||..||:|||::|:|.|:..::::.:|
Zfish   786 ----GFLRSDKPVGSAQIKLEKLEAQSEVREIVELMDGRKATGGRLEVRVRLREPLGGQELQTVT 846

  Fly   827 EKWLVLD 833
            |:|:||:
Zfish   847 ERWVVLE 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)gd1NP_001245976.1 DM14 142..200 CDD:128928 24/57 (42%)
DM14 260..318 CDD:128928 22/57 (39%)
DM14 362..420 CDD:128928 31/57 (54%)
DM14 499..557 CDD:128928 21/57 (37%)
C2_Freud-1 661..832 CDD:176072 60/176 (34%)
cc2d1bXP_005171255.1 PARM 121..>282 CDD:293666 49/164 (30%)
DM14 155..210 CDD:128928 24/57 (42%)
DM14 300..354 CDD:128928 21/53 (40%)
DM14 388..442 CDD:128928 28/53 (53%)
DM14 536..594 CDD:128928 21/57 (37%)
C2_Freud-1 695..852 CDD:176072 60/176 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594104
Domainoid 1 1.000 332 1.000 Domainoid score I1117
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 465 1.000 Inparanoid score I1515
OMA 1 1.010 - - QHG49459
OrthoDB 1 1.010 - - D408012at33208
OrthoFinder 1 1.000 - - FOG0003388
OrthoInspector 1 1.000 - - otm26168
orthoMCL 1 0.900 - - OOG6_104069
Panther 1 1.100 - - O PTHR13076
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2281
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.910

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