DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and reps1

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001039195.1 Gene:reps1 / 734049 XenbaseID:XB-GENE-946290 Length:545 Species:Xenopus tropicalis


Alignment Length:697 Identity:172/697 - (24%)
Similarity:260/697 - (37%) Gaps:254/697 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 RHSSDDDDNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNFFEKSRIPVEELRHIW 308
            |.||..||.       ::||.|||:||..||:.:|.|.:|.:.|.:|:.||.||::|:.||.|||
 Frog    23 RQSSSYDDP-------WKITDEQRQYYINQFKNIQPDLNGFIPGSSAKEFFTKSKLPIPELSHIW 80

  Fly   309 QLCDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHPNVLQAAASGSGQGVTSSSSAALP 373
            :|.|..:||||:|.||.||.||||.|:|...||..||..|.|.::                    
 Frog    81 ELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPKLI-------------------- 125

  Fly   374 QEPPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDKNIMNLSSISTSSQASNSSK 438
                          |.||.|     ||:                          .|:.....||.
 Frog   126 --------------DLDDGT-----AGD--------------------------QTTDVGFTSSP 145

  Fly   439 REATPQNSLGKNRSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSESPTTSAVSVQSTTGA 503
            .||.|          |.||::.     :::.|...::.:  |.||..|||..::|....|..:..
 Frog   146 AEAPP----------SKSPSMP-----SLNQTWPEMNQS--SEQWETFSERSSSSQTLTQFDSNI 193

  Fly   504 APVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPVPLRVTP--IGTAIASSAESSNEN 566
            ||           :.|                  :..|:||||:|:||  |.........::::.
 Frog   194 AP-----------ADP------------------DTAIVHPVPIRMTPSKIHMQEMELKRTASDP 229

  Fly   567 ESAVAQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDLRAIQRPQAKKLPAKNSALPPP 631
            .::.:.....|:.:|..:..|.|...:.|.|...|.:..||.:    ..|:    ..:|.|    
 Frog   230 ANSKSPLHMKPQELSEESTLNSSVKFISGNSVADGYNSSDSFN----SEPE----EIENVA---- 282

  Fly   632 PQREPSIGSTGPSESQEPQAAYVASSLASKKEPPPLPPPRPH-RHARSSSLDLNKFKIGATGGAQ 695
             .|:.|..||.|..:                .||| |||||| .|:||||||:|:.....|.|.|
 Frog   283 -TRQRSHSSTSPDNT----------------APPP-PPPRPHASHSRSSSLDMNRTFAVTTAGQQ 329

  Fly   696 QAEITAQ------ASFDMQTS---------------------------TGFADFTHF-------- 719
            ||....|      .....|||                           ..||||:.|        
 Frog   330 QATTVVQPPAVPPRPLPTQTSGSHMHRSVESEGVMSHPSTSPQQMPEQPNFADFSQFEAFSCVTE 394

  Fly   720 --------------ADEGAANVVDEQQLHSL-----------------PPAAPPPQAAVVPPTRI 753
                          .::.:::.|...:|:.|                 .|.||||:     |.|.
 Frog   395 QSSDDSEKHTEVASVEKSSSDSVRASKLNGLVEEKSVTAVSVNSGKIGTPLAPPPK-----PVRR 454

  Fly   754 TLQQAQQRVSAFEVYRKPQTPRGSQSPPQQPPPPAPAVGLTTQTGQLPSAESFEKRVTAISDSLR 818
            .|:...:..|..|.:.:    :.|.:|....|.|:           :|.:...:|:  ||..|:|
 Frog   455 RLKSEDELRSEAEEHNQ----KTSTAPTAIAPQPS-----------IPRSAGKDKK--AIQASIR 502

  Fly   819 HVSFKQGQANTTEVLQRLREQNNSLLHLCNDLSDELLSVQTRKEEMR 865
                :..:.||  ||.||   |:.|.....|:.:|.:|::.:.|::|
 Frog   503 ----RNKETNT--VLARL---NSELQQQLKDVLEERISLEVQLEQLR 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 43/82 (52%)
EH 270..336 CDD:238009 34/65 (52%)
reps1NP_001039195.1 EH 31..122 CDD:197477 46/97 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7204
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116563at33208
OrthoFinder 1 1.000 - - FOG0002901
OrthoInspector 1 1.000 - - otm48417
Panther 1 1.100 - - O PTHR11216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3315
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.020

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