DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and CG9297

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001262553.1 Gene:CG9297 / 41688 FlyBaseID:FBgn0038181 Length:952 Species:Drosophila melanogaster


Alignment Length:639 Identity:113/639 - (17%)
Similarity:176/639 - (27%) Gaps:247/639 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 NSQQEQLQDTSDVPS-TDSEVE----QNESVDDATGHG------RGTDGCGVVSSSSRENVGRRR 187
            |.:.:.: |...:|: .|.:::    .||..||..|.|      ...||.||.:|...:..|..:
  Fly   124 NEKDDDI-DGDGIPNDEDDDIDGDGIPNEDDDDIDGDGVPNSKDEDIDGDGVPNSKDEDIDGDGK 187

  Fly   188 ---------GGGT---------GGGSPEAWSTNSDSPTPTNSVAERPWAQDTLWQGLLGDEHRQL 234
                     |.||         |.|.|.....:.|.....|...|     |....|:..||...|
  Fly   188 ANHEDDDLDGDGTPNHEDEDLDGDGVPNEEDDDLDGDGKINHEDE-----DLDGDGVKNDEDEDL 247

  Fly   235 LGTEEESSDRHSSDDDDNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNF----FE 295
            .|   :....|..:|.|.:.                      |:.:....|.|....|.    .:
  Fly   248 DG---DGKVNHEDEDLDGDG----------------------VKNEKDDDLDGDGTNNSQDEDLD 287

  Fly   296 KSRIPVEELRHIWQLCDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHPNVLQAAASGS 360
            ...:|.|:        |...||...|:|....:                               .
  Fly   288 GDGVPNEK--------DDDLDGDGILNEHDGDV-------------------------------D 313

  Fly   361 GQGVTSSSSAALPQEPPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDKNIMNLS 425
            |.||        |.|....|.....|||:||..::                      ||..:   
  Fly   314 GDGV--------PNEHDHKDSGENADDDDDDDDED----------------------DKEAV--- 345

  Fly   426 SISTSSQASNSSKRE--ATPQNSLGKNRSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSE 488
                    ...||||  |.|...:    ....||..|.||...:...|||.:...|.:  .| .|
  Fly   346 --------KKRSKREVDAAPVLDI----EAPPSPAEEFPVEEEIVKEASAEEEAEVEA--VK-EE 395

  Fly   489 SPTTSAVSVQSTTGAAPVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQI-LHPVPLRVTPI 552
            .|...||                     ..|..:||:            .|:. :.|.|::    
  Fly   396 EPEQEAV---------------------QEPEPEPVV------------EPEAEVQPEPVQ---- 423

  Fly   553 GTAIASSAESSNENESAVAQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDLRAIQRPQ 617
                    :...:.|||.|:.|:.|..:.......:|                       :|...
  Fly   424 --------QEEEKAESAEAKEEEKPAPVEEAEAEEES-----------------------VQPEA 457

  Fly   618 AKKLP--AKNSALPPPPQREPSIGSTGPSESQEPQ-----AAYVASSLASKKEPPPLPPPRPHRH 675
            |.|.|  .:..|....||.:.:..:....:..:|:     ..::..:..|::....|.......:
  Fly   458 APKEPEAVQEEAQEDEPQTDGAQDAADDDDDTKPEDELLWEGHIPENRRSRQHITELLQLDEEFN 522

  Fly   676 ARSSSLD------LNKFKIGATGGAQQAEITAQASFDMQTSTGFADFT--HFAD 721
            ||..:.|      |...|          .|...|...::|...:.|.:  ||:|
  Fly   523 AREKATDNVAEIILRDIK----------RIYENAVKPLETLYKYRDLSNRHFSD 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 11/86 (13%)
EH 270..336 CDD:238009 11/69 (16%)
CG9297NP_001262553.1 TSP3 repeat_long 167..205 CDD:275366 9/37 (24%)
EHD_N 539..569 CDD:293485 8/38 (21%)
EHD 574..813 CDD:206740
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11216
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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