DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and Reps2

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_038956397.1 Gene:Reps2 / 363466 RGDID:1561642 Length:649 Species:Rattus norvegicus


Alignment Length:925 Identity:223/925 - (24%)
Similarity:323/925 - (34%) Gaps:361/925 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LTEPETRFYSELF-QCCDVEKTGKVP-MLKAT---------------ELFRSADIANETVIEITG 52
            |::.|.:.||||| :|......|..| .|:||               :|||::.:..||:.:||.
  Rat    17 LSDSEQQCYSELFARCAGAASGGPGPGPLEATRVAPGILTAAAGPVADLFRASQLPPETLHQITE 81

  Fly    53 LAGIPSTALHISRTQFYSCLKLIAAHQAAMPLRQELILATFPLPLPHFSWKEA---VTAPVAVEN 114
            |.|..... :...||||..||||||.||.:|:|.|.|....|||....|..:|   |..|..:..
  Rat    82 LCGAKRVG-YFGPTQFYVALKLIAAAQAGLPVRTESIKCELPLPRFVMSKNDAEMRVGNPAELHG 145

  Fly   115 GLTALPPPPPTDRRNSLRRNSQQEQLQDT-----SDVPSTDSEVEQNESVDDATGHGR---GTDG 171
              |.:..|..|..:||.:|...:|:.|:|     |.:.|..|.....:.|..:.|:.:   ||:.
  Rat   146 --TKVQIPYLTSEKNSFKRLDDEEKQQETPSPRMSPLASPPSSPPHYQRVPLSHGYSKLRSGTEQ 208

  Fly   172 CGVVSSSSRENVGRRRGGGTGGGSPEAWSTNSDSPTPTNSVAERPWAQDTLWQGLLGDEHRQLLG 236
            .......||:.:|:..|            .:|:.|      ..:|:.:..   .|:     :...
  Rat   209 MHPAPYESRQPIGQPEG------------PSSEGP------GTKPFRRQA---SLI-----RSFS 247

  Fly   237 TEEESSDRHSSDDDDNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNFFEKSRIPV 301
            .|.|..:.:|:..|:.       ::||.||||||..|||::|.||...:||..|:|||.||::.:
  Rat   248 VERELQENNSNYPDEP-------WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSI 305

  Fly   302 EELRHIWQLCDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHPNVLQAAASGSGQGVTS 366
            .||.:||:|.|...||||:|.||.||.||:|.|:|..|||..||..|.|..||||          
  Rat   306 AELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQPEYLQAA---------- 360

  Fly   367 SSSAALPQEPPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDK-NIMNLSSISTS 430
                                                            .|..| ..:...|.|.|
  Rat   361 ------------------------------------------------FPKSKWECVIFDSYSES 377

  Fly   431 SQASNSSKREATPQNSLGKNRSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSESPTTSAV 495
            ..|:         |.|...||                      ::.|:|..              
  Rat   378 MPAN---------QQSCDLNR----------------------MEKTSVKD-------------- 397

  Fly   496 SVQSTTGAAPVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPVPLRVTPIGTAIASSA 560
                                         :.|...|.|||.                 |.....|
  Rat   398 -----------------------------MADFPVSTQDVT-----------------TGDDKQA 416

  Fly   561 ESSNENESAVAQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDLRAIQRPQAKKLPAKN 625
            ..|..|||.       ||.:|..|                 ::.:|.:.|:|  ||:::      
  Rat   417 LKSTVNESL-------PKDVSEDT-----------------ATSKDCNSLKA--RPRSR------ 449

  Fly   626 SALPPPPQREPSIGSTGPSESQEPQAAYVASSLASKKEPPPLPPPRPHR-HARSSSLDLNKFKIG 689
                       |..||...|:.:            :.|.||.|||||.: |:|:|||||||    
  Rat   450 -----------SYSSTSIEEAMK------------RGEDPPTPPPRPQKTHSRASSLDLNK---- 487

  Fly   690 ATGGAQQAEITAQASFDMQTSTGFADFTHFADEGAANVVDEQQLHSLPPAAP------------- 741
                ..|..::|                  |:.|         |...|||.|             
  Rat   488 ----VFQPSVSA------------------ANSG---------LLPPPPALPPRPCPTQAEPASE 521

  Fly   742 ----------PPQAAVVPPTRITLQQAQQRVSAFEVYRKP--QTPRGSQSPPQQPPPPAPAVGLT 794
                      |.|||...||:..:..||..........:|  ||..|.:|        |..||  
  Rat   522 ADLYPQMNRAPSQAAESSPTKKDVPHAQPPSKPIRRKFRPENQTTEGQES--------AAVVG-- 576

  Fly   795 TQTGQLPSA---------ESFEKRVTAISDSLRHVSFKQGQANTTEVLQRLREQNNSLLHLCNDL 850
               |..|:|         :...|:..||..::|    |..:||.  ||.||   |:.|.....::
  Rat   577 ---GAAPAAMVKPHPTVQKQSSKQKKAIQTAIR----KNKEANA--VLARL---NSELQQQLKEV 629

  Fly   851 SDELLSVQTRKEEMR 865
            ..|.::::.:.|::|
  Rat   630 HQERIALENQLEQLR 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 45/82 (55%)
EH 270..336 CDD:238009 34/65 (52%)
Reps2XP_038956397.1 EF-hand_4 18..112 CDD:332633 33/94 (35%)
EFh <62..108 CDD:415501 19/46 (41%)
EH 263..358 CDD:197477 49/101 (49%)
PRK14971 <490..646 CDD:237874 44/204 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 97 1.000 Domainoid score I7072
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 153 1.000 Inparanoid score I4248
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116563at33208
OrthoFinder 1 1.000 - - FOG0002901
OrthoInspector 1 1.000 - - otm45339
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11216
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3315
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

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