DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and reps-1

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:NP_001370135.1 Gene:reps-1 / 180241 WormBaseID:WBGene00012696 Length:410 Species:Caenorhabditis elegans


Alignment Length:664 Identity:127/664 - (19%)
Similarity:193/664 - (29%) Gaps:341/664 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 RHSSDDDDNESELVTIYQITPEQREYYNKQFR----TVQ--RDPHGLLSGQAAR--NFFEKSRIP 300
            :|:|..|.|...|   ::||.:|:|||.|.||    |.|  .|..|.|.|...|  .||::|.:.
 Worm    31 KHTSPADSNADSL---FKITEKQQEYYTKCFRHLIKTTQGAADLCGALCGADQRIVAFFKRSSLD 92

  Fly   301 VEELRHIWQLCDVTRDGALSLSEFTAAMHLVVLR-RNNIPLPTSLPHCLHPNVLQAAASGSGQGV 364
            :..|..||.|.||..||.|.|:||:.|||||||: :..:|:|..||....|.:.:          
 Worm    93 MSSLSKIWSLADVNEDGWLDLNEFSIAMHLVVLKVKGEVPIPDVLPGFARPPLTE---------- 147

  Fly   365 TSSSSAALPQEPPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDKNIMNLSSIST 429
                                                            |..||            
 Worm   148 ------------------------------------------------PRAPS------------ 152

  Fly   430 SSQASNSSKREATPQNSLGKNRSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSESPTTSA 494
                                                ||::|                        
 Worm   153 ------------------------------------TVAAT------------------------ 157

  Fly   495 VSVQSTTGAAPVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPVPLRVTPIGTAIASS 559
               .|..||..|.|.|...:.|:.|.:|                                     
 Worm   158 ---PSPAGAGHVEADGPVKNWANQPIIK------------------------------------- 182

  Fly   560 AESSNENESAVAQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDLRAIQRPQAKKLPAK 624
                        |..|:|..:    |:::.:|:                               |
 Worm   183 ------------QFSDTPPLL----VDSRPTAI-------------------------------K 200

  Fly   625 NSALPPPPQREPSIGSTGPSESQEPQAAYVASSLASKKEPPPLPPPRPHR----HARSSSLDLNK 685
            :|||                           .:|.|...|||:||.||.:    |.||:||||..
 Worm   201 HSAL---------------------------LALKSPLGPPPIPPVRPQQQQRGHNRSASLDLKL 238

  Fly   686 FKIGATGGAQQAEI--------------TAQASFDMQTSTGFADFTHFADEGAANVVDEQQLHSL 736
            ..:..|..:.::::              |||:.....|:|.||.|.                 :.
 Worm   239 IALNKTKASAESQLPPTTLSLWSSHSDPTAQSISTTTTTTTFASFP-----------------AT 286

  Fly   737 PPAAPPPQAAVVPPTRITLQQAQQRVSAFEVYRKPQTPRGSQSPPQQPPPPAPAV---------- 791
            |.:.|||     .|.|||                              |.|.|.|          
 Worm   287 PDSIPPP-----IPQRIT------------------------------PSPLPRVIEEEKRITTT 316

  Fly   792 GLTTQTGQ-LPSAESFEKRVTAISDSLRHVSFKQGQANTTEVLQRLREQNNSLLHLCNDLSDELL 855
            ..:|||.: |.|.|..:...:.|...:..:..::.||...:.::|.:|:..:|    ...:.||.
 Worm   317 DSSTQTTELLYSEEDVKSFFSKIGHQIDDLIGEEIQATDGQGIERWKERCTAL----RTQNSELE 377

  Fly   856 SVQTRKEEMRLKLE 869
            :.:.|..::|::||
 Worm   378 AERARLAQVRIQLE 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 40/91 (44%)
EH 270..336 CDD:238009 33/74 (45%)
reps-1NP_001370135.1 EH 54..128 CDD:238009 33/73 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I7342
eggNOG 1 0.900 - - E1_KOG1955
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 115 1.000 Inparanoid score I3397
Isobase 1 0.950 - 0 Normalized mean entropy S6242
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002901
OrthoInspector 1 1.000 - - oto17251
orthoMCL 1 0.900 - - OOG6_114738
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5227
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.790

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