DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and reps2

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_005162468.3 Gene:reps2 / 101882936 ZFINID:ZDB-GENE-130415-3 Length:656 Species:Danio rerio


Alignment Length:913 Identity:206/913 - (22%)
Similarity:312/913 - (34%) Gaps:322/913 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VSLTEPETRFYSELFQCCDVEKTGKVPMLKATELFRSADIANETVIEITGLAGIPSTALHISRTQ 67
            :||::.|.|.||.|:..|..:.:|.....|..||||::.:..||:.::..:.|...... ....|
Zfish    11 MSLSDTEQRCYSGLYALCQPDSSGIPAAGKVAELFRASQLPAETLHQVMEVCGAKRLGF-FGCGQ 74

  Fly    68 FYSCLKLIAAHQAAMPLRQELILATFPLPL-------------PHFSWKEAVTAPVAVENGLTAL 119
            ||:.|||:||.||.:|:|.|.|....|||:             .|.|..|:....:   ..:.|.
Zfish    75 FYAALKLLAAAQAGLPVRLESIAGELPLPVFVGITNELDTRYANHLSTNESQPHTL---GSVPAS 136

  Fly   120 PPPPPTDRRNSLRRNSQQEQLQDTSDVPSTDSEVEQNESVDDATGHGRGTDGCGVVSSSSRENVG 184
            .|.|||||. .||........|:....|.:...:....|..               :..|.....
Zfish   137 APRPPTDRA-VLRHPDTSMDKQEAWSPPRSPPSISPPRSPS---------------AYRSLTYSA 185

  Fly   185 RRRGGGT----GGGSPEAWSTNSDSPTPTNSVAERPWAQDTLWQGLLGDEHRQLLGTEEESSDRH 245
            :|.|..|    .|..|...|...::.:|.:...:....|.::.:          :.:.|...:|.
Zfish   186 QRNGTDTLLAYDGKMPGRPSVPQENASPGHYSFKLQPEQPSITR----------VASVERLVERV 240

  Fly   246 SSDDDDNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNFFEKSRIPVEELRHIWQL 310
            ..|..|:.      ::||.||||||..|||::|.|.:.|:.|..|:|||.||::|:.||.|||:|
Zfish   241 EVDYSDDP------WRITEEQREYYTNQFRSLQPDLNALIMGAVAKNFFTKSKLPIPELSHIWEL 299

  Fly   311 CDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHPNVLQAAASGSGQGVTSSSSAALPQE 375
            .||.:||||:..||..|.||:|.|:|...||.:||..|.|...:...:.:               
Zfish   300 SDVDKDGALTFPEFCTAFHLIVARKNGYLLPETLPASLRPGFQEPVVTAA--------------- 349

  Fly   376 PPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDKNIMNLSSISTSSQASNSSKRE 440
            |.||                               .:|.:..|.|:|                  
Zfish   350 PSEA-------------------------------TQPLIVFDDNMM------------------ 365

  Fly   441 ATPQNSLGKNRSISNSPNVEKPVSGTVSSTASAVDSTNVSSQWTKFSESPTTSAVSVQSTTGAAP 505
                            |...:...|                            :|.:|.|     
Zfish   366 ----------------PGANQLEMG----------------------------SVDLQVT----- 381

  Fly   506 VVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPVPLRVTPIGTAIASSAESSNENESAV 570
                       |.||:     ..|:..:|....|:|   .|.||       ....|...:..||:
Zfish   382 -----------SRPGV-----TTKQDTRDESRKPEI---SPKRV-------PEPHEKPMQRVSAL 420

  Fly   571 AQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDLRAIQRPQAKKLPAKNSALPPPPQRE 635
              :.|||:.:                          .:::::..||:                  
Zfish   421 --KPDSPQEL--------------------------DANMKSRTRPR------------------ 439

  Fly   636 PSIGSTGPSESQEPQAAYVASSLASKKEPPPLPPPRPHR-HARSSSLDLNKFKIGATGGAQQAEI 699
             |..||...::.:            |.|.||.|||||.: |:|:|||||||.....|.||:...:
Zfish   440 -SYSSTSIDDAMK------------KVEEPPTPPPRPQKSHSRASSLDLNKLLQQGTPGAKSGWL 491

  Fly   700 ---------------------TAQASFDMQTSTGFADFTHFADEGAANV---VDEQQLHSLPPAA 740
                                 :.::|........||||:.|.:|..:.|   :..:.|  |||.:
Zfish   492 PPPPALPPRPPATQIFSFLPGSEKSSQKAVQQPNFADFSRFREEQESGVRAGLSTEDL--LPPKS 554

  Fly   741 P--------PPQAAVVPPTRITLQQAQQRVSAFEVYRKPQTPRGSQSPPQQPPPPAPAVGLTTQT 797
            .        .||    .|.|..|....|  ||......|.:......|.|:|||           
Zfish   555 DCSLVHQGHAPQ----KPMRRKLHPESQ--SATPPLTTPYSAATLTKPTQRPPP----------- 602

  Fly   798 GQLPSAESFEKRVTAISDSLRHVSFKQGQANTTEVLQRLREQNNSLLHLCNDLSDELLSVQTRKE 862
                      |:...|..::|.      ...|..||.||   |:.|......:..|.|:::|:.|
Zfish   603 ----------KQKREIQMAIRK------NRETNAVLTRL---NSELQQQLKVVHGERLTLETQLE 648

  Fly   863 EMR 865
            .||
Zfish   649 SMR 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 44/82 (54%)
EH 270..336 CDD:238009 34/65 (52%)
reps2XP_005162468.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116563at33208
OrthoFinder 1 1.000 - - FOG0002901
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5227
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.040

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