DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Reps and reps2

DIOPT Version :9

Sequence 1:NP_609487.2 Gene:Reps / 34542 FlyBaseID:FBgn0032341 Length:907 Species:Drosophila melanogaster
Sequence 2:XP_012812936.1 Gene:reps2 / 100497375 XenbaseID:XB-GENE-985000 Length:693 Species:Xenopus tropicalis


Alignment Length:955 Identity:221/955 - (23%)
Similarity:333/955 - (34%) Gaps:386/955 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDVSLTEPETRFYSELFQCCDVEKTGKVP--MLKATELFRSADIANETVIEITGLAGIPSTALHI 63
            :.:.:::.|.:.|||||..|..|.:.::.  ..|..||||::.:..:|:.:||.|.|    |.|:
 Frog    30 LHLPMSDKEQKCYSELFSMCQAEGSARLAAGSNKVGELFRASKLPADTLHQITELCG----AKHV 90

  Fly    64 ---SRTQFYSCLKLIAAHQAAMPLRQELILATFPLPLPHFSWKEAVT--------APVAVENGLT 117
               ...||:..|||||..|..:|:..|.|.:  .||||||.:.::::        |.|..|    
 Frog    91 GYFGPAQFFVALKLIAVAQTGLPVCLESIKS--ELPLPHFIFMKSLSDSDLKHGAATVTSE---- 149

  Fly   118 ALPPPPPTDRRNSLRRNSQQEQLQDTSDVPSTDSEVEQNESVDDATGHGRGTDGCGVVSSSSREN 182
                   |...||..:        |.|...|:|...:|             :|...:||......
 Frog   150 -------TQGLNSATK--------DKSYFKSSDEGEKQ-------------SDAKTLVSPKKSPP 186

  Fly   183 VGRRRGGGTGGGSPEAW-----STNSDSPTPTNSVAERPWAQDTLWQGLLGDEHRQL-------- 234
            |           ||:.:     .:.||.   .||.|.....|.:|.|   .|.|..|        
 Frog   187 V-----------SPQNYGHSLLQSRSDH---HNSAAAYETRQPSLLQ---QDGHLPLNYGNQPAP 234

  Fly   235 ----LGTEEESSDRHSSDDDDNESELVTIYQITPEQREYYNKQFRTVQRDPHGLLSGQAARNFFE 295
                |.....|.:|.|.||..|.||  ..::||.||||||..||.|:|.|...|:||..|:|||.
 Frog   235 LQLSLSRLSLSVERESLDDPSNYSE--DPWRITEEQREYYTNQFITLQPDLKSLISGSVAKNFFT 297

  Fly   296 KSRIPVEELRHIWQLCDVTRDGALSLSEFTAAMHLVVLRRNNIPLPTSLPHCLHPNVLQAAASGS 360
            ||::|:.||.|||.|.||..||||:|:||:||.||:|.|:|...:|.:||..|...::|      
 Frog   298 KSKLPISELSHIWDLSDVDCDGALTLTEFSAAFHLIVARKNGYEVPDTLPRTLLAEIIQ------ 356

  Fly   361 GQGVTSSSSAALPQEPPEADLLHLNDDDEDDHTDNTIIAGNLSGSSTTSKPRPNVPSDKNIMNLS 425
                                                  .|:|                       
 Frog   357 --------------------------------------TGSL----------------------- 360

  Fly   426 SISTSSQASNSSKREATPQNSLGKNRSISNSPNVEKPVSG----------TVSSTASAVDSTNVS 480
                                               ||:||          ||..:...:::.   
 Frog   361 -----------------------------------KPISGDAYEGCRGTSTVCQSRKELETV--- 387

  Fly   481 SQWTKFSESPTTSAVSVQSTTGAAPVVAAGAAASGASSPGLKPVLFDMKRSAQDVVSNPQILHPV 545
                  .|.|.||          .|:                 :|||.:.||.:           
 Frog   388 ------CEDPATS----------EPL-----------------ILFDEETSATE----------- 408

  Fly   546 PLRVTPIGTAIASSAESSNENESAVAQREDSPKAISSTTVNNQSSAVVPGISGVAGSSHRDSSDL 610
                   .::.|::.:..||.:...|:.:.....:|...|.      |........|.|::|..|
 Frog   409 -------PSSAAAAPQDQNEVKQDSAENDKQGSKLSFPLVE------VKSFKTFKSSVHQESYTL 460

  Fly   611 RAIQRPQAKKLPAKNSALPPPPQREPSIGSTGPSESQEPQAAYVASSLASKKEPPPLPPPRPHR- 674
            :.  ||:::                 |..:|...|:.:            |.|.||.|||||.: 
 Frog   461 KT--RPRSR-----------------SYSNTSIEETMK------------KVEDPPTPPPRPQKT 494

  Fly   675 HARSSSLDLNKFKIGATGGAQQAEITAQASFDMQTSTGFADFTHFADEGAANVVDEQQLHSLPPA 739
            |:|:||||||:.       .||....|:|.:                              :||.
 Frog   495 HSRASSLDLNRI-------IQQNSPAARAGW------------------------------IPPP 522

  Fly   740 APPPQAAV-------------VP---PTRITLQQAQQRVSAFEVYRKPQT----PRGSQSPPQQ- 783
            |.||:..:             :|   |.....:..:||....|:...|||    |:..:|.|.: 
 Frog   523 ALPPRPCISQNPHHSSNTDQKMPIQQPNFADFRSQEQRERVAEIELHPQTNKMLPQTEESSPAKK 587

  Fly   784 -----PPPPAP-------------------AVGLTTQTGQLPSAESFE----KRVTAISDSLRHV 820
                 .||..|                   |..:|:....|.|..|.:    ||..||..::|  
 Frog   588 EILLNQPPMKPLRRKFLTESQVLENHELSSASSVTSSVTSLKSHPSVQKQPSKRKKAIQTAIR-- 650

  Fly   821 SFKQGQANTTEVLQRLREQNNSLLHLCNDLSDELLSVQTRKEEMR 865
              |..:||.  ||.||   |:.|.....::..|.::::|:.|::|
 Frog   651 --KNKEANA--VLARL---NSELQQQLKEVHQERIALETQLEQLR 688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepsNP_609487.2 EH 262..345 CDD:197477 46/82 (56%)
EH 270..336 CDD:238009 37/65 (57%)
reps2XP_012812936.1 EFh 42..110 CDD:385324 26/71 (37%)
EH 261..353 CDD:197477 49/91 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7204
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116563at33208
OrthoFinder 1 1.000 - - FOG0002901
OrthoInspector 1 1.000 - - otm48417
Panther 1 1.100 - - LDO PTHR11216
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5227
SonicParanoid 1 1.000 - - X3315
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.140

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