DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and SAMD1

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_612361.1 Gene:SAMD1 / 90378 HGNCID:17958 Length:538 Species:Homo sapiens


Alignment Length:610 Identity:123/610 - (20%)
Similarity:194/610 - (31%) Gaps:174/610 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 PPSGPSMATATTTSSLSSSSSASASASASASAATHMPLHNLSTNLLNSIQQAAASQQQLRSSNSN 379
            ||  |..|.|.||::.:|||:||.               :....:|::|       ..|||..:.
Human     8 PP--PETAAAATTAAAASSSAASP---------------HYQEWILDTI-------DSLRSRKAR 48

  Fly   380 SSSNISGSSNNTKSDGGAASNATDFSTRNYSDIMRCLAAKYNNANPNDNNATRRNSYYDGSTSAT 444
              .::.......:...|.....|.............|...| ..:.:..||.|......|:|...
Human    49 --PDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSY-KGSISYRNAARVQPPRRGATPPA 110

  Fly   445 TATGGAGGGGGGAGGSNSAPSSALKTASSST-------GSTTTTAKKLSPSAASAANSAAVS--- 499
            ......|           ||::|...|...|       ......|...:|.||:||.:|..|   
Human   111 PPRAPRG-----------APAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGP 164

  Fly   500 ------LSKESKVSAVGGA-GVGGAVASSGGG--------GSSMSQLAPPPTAPSPTEQAK---- 545
                  ..:.:.::|...| ....|||...|.        .:....|.|||..|:|.:|.:    
Human   165 AQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPP 229

  Fly   546 -----SQMAAVVAAASVSPF----MTNFLPFSSGIFPPLIDMSSTQALLTLARAVKDAEIQEILR 601
                 .:..||.|..:..|.    :..:|..|.|          ....||..|.....|.:...|
Human   230 QPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGG----------AGGRLTRGRVQGLLEEEAAAR 284

  Fly   602 SKQQRSGSNA-----------SSPSASAAGTPRSSSTLNAALHQAAQFVTPALIYSAQLQQQQQQ 655
            .:.:|:...|           :.|:|||    |.|.:......:.             |::::::
Human   285 GRLERTRLGALALPRGDRPGRAPPAASA----RPSRSKRGGEERV-------------LEKEEEE 332

  Fly   656 QQQQHQRQQQQQS--------------QH--ASRQSSPRSTNDSTTV-APIGDGGGGSSIASAAP 703
            ...:.:.::...|              ||  .:.:..|:|..:.... .|.|...|.......||
Human   333 DDDEDEDEEDDVSEGSEVPESDRPAGAQHHQLNGERGPQSAKERVKEWTPCGPHQGQDEGRGPAP 397

  Fly   704 LDLSSQPPAAKRFKAERRASSTATTATTATTGSSTSTPSPPPLEQHDDINSGNANATLGTRSGTG 768
               .|.........|..:...||:.||      ...:|||.||........|             
Human   398 ---GSGTRQVFSMAAMNKEGGTASVAT------GPDSPSPVPLPPGKPALPG------------- 440

  Fly   769 TGESSAAGSGAGVAKARRRCQAQSEEVNSWSVDDV------CGFVGGIDICAEYVQSFRDQSIDG 827
                 |.|:..|....|:  :..|:.| .|:|.||      .||       .|...:|::|.|||
Human   441 -----ADGTPFGCPPGRK--EKPSDPV-EWTVMDVVEYFTEAGF-------PEQATAFQEQEIDG 490

  Fly   828 TGLPLLTEDHLVNSLGMKLGPALKL 852
            ..|.|:....::..|.::||||||:
Human   491 KSLLLMQRTDVLTGLSIRLGPALKI 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 22/64 (34%)
SAM 795..852 CDD:197735 21/62 (34%)
SAMD1NP_612361.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30 12/38 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 92..247 35/165 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..458 36/221 (16%)
SAM_Atherin-like 459..527 CDD:188982 22/65 (34%)
SAM 459..525 CDD:197735 22/65 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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