DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and Deaf1

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:XP_008758233.1 Gene:Deaf1 / 83632 RGDID:620671 Length:570 Species:Rattus norvegicus


Alignment Length:700 Identity:125/700 - (17%)
Similarity:226/700 - (32%) Gaps:227/700 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 LERLASDLRQLGKKGRRSRSVSPCSRYPAVAETARMLSERSLLLSGYGAIESSAKK--LSE---- 125
            :|...|..:|||                 :||.|.:.:..::..:...|.||.|::  ||.    
  Rat     1 MEDSDSAAKQLG-----------------LAEAAAVAAAAAVAAAAAAAAESEAEEPVLSRDEDS 48

  Fly   126 ----------------AATGGAGGGGGGAAGQAATPTTSQLSAPASSASSSSMSSSSAGSTC--- 171
                            |....|...|....|..|.|:..:.:|.|:.|..::::.::.||:.   
  Rat    49 EEDADSEAERETRRVTAVAVMAAESGHMDMGTEALPSPDEAAAAAAFAEVTTVTVANVGSSADNV 113

  Fly   172 --TTNANTASVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNN--NNTINNNNSSSSSSSSIIN 232
              |:.||.||::....:........:.::..| |.::.:|.:.:  ..|.....::..:.:|:..
  Rat   114 FTTSVANAASISGHVLSGRTALQIGDSLNTEK-ATLIVVHTDGSIVETTGLKGPAAPLTPASLCP 177

  Fly   233 NHQSSQPSLGHSVKRERLSPGSNSSSHNGELTVSSFARSRSATPSSSSYRGAGGGAGGGVSPSHQ 297
            ..||....|....::.......:.|.::.||.|      |....|.:.|:...|..|.|      
  Rat   178 GPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPV------RCRNISGTLYKSRLGSGGRG------ 230

  Fly   298 QQQQQQQQSLQQQQRLSPPSGPSMATATTTSSLSSSSSASASASASASAATHMPLHNLSTNLLNS 362
                   :.::|        |.:..:.|...:::..:|                    |.:...|
  Rat   231 -------RCIKQ--------GENWYSPTEFEAMAGRAS--------------------SKDWKRS 260

  Fly   363 IQQAAASQQQLRSS---NSNSSSNISGSSNNTKSDGGAASNATDFSTRNYSDIMRCLAAKYNNAN 424
            |:.|....|.|...   |.:::|....:..:..:..|.......:..|...:.:.....|.::. 
  Rat   261 IRYAGRPLQCLIQDGILNPHAASCTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSP- 324

  Fly   425 PNDNNATRRNSYYDGSTSATTATGGAGGGGGGAGGSNSAPSSALKTASSSTGSTTTTAKKLSPSA 489
                    :|.....:|:|||.|              ..||..:           ||:..|:...
  Rat   325 --------KNITLLPATAATTFT--------------VTPSGQI-----------TTSGALTFDR 356

  Fly   490 ASAANSAAVSLSKESKVSAVGGAGVGGAVASSG--------------GGGSSMSQLAPPPTAPSP 540
            ||...:.||.    |:..|.|....|..|..:|              .|.....|:||.|.|..|
  Rat   357 ASTVEATAVI----SESPAQGDVFAGATVQEAGVQPPCRVGHPEPHYPGYQDSCQIAPFPEAALP 417

  Fly   541 TEQAKSQMAAVVAAA--------SVSPFMTNFLPFSSGIFPPLIDMSSTQALLTLARAVKDAEIQ 597
            |...|..:.::.|.|        :|||.:.      ||     ::||..::.|.|     :..:.
  Rat   418 TSHPKIVLTSLPALAVPPSTPTKAVSPTVV------SG-----LEMSEHRSWLYL-----EEMVN 466

  Fly   598 EILRSKQQRSGSNASSPSASAAGTPRSSSTLNAALHQAAQFVT--PALIYSAQLQQQQQQQQQQ- 659
            .:|.:.||                      |.....||.|..:  .|.:..|::|...::::|. 
  Rat   467 SLLNTAQQ----------------------LKTLFEQAKQASSCREAAVTQARMQVDAERKEQSC 509

  Fly   660 --------------H---------QRQQQQQSQHASRQSSPRSTNDSTTV 686
                          |         ||:..:..||...||:      |.||
  Rat   510 VNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHVCGQSA------SVTV 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978
SAM 795..852 CDD:197735
Deaf1XP_008758233.1 SAND 203..277 CDD:279658 19/120 (16%)
zf-MYND 509..545 CDD:280009 5/35 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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