DRSC/TRiP Functional Genomics Resources

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Protein Alignment Samuel and Gmeb1

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001116464.1 Gene:Gmeb1 / 56809 MGIID:2135604 Length:562 Species:Mus musculus


Alignment Length:259 Identity:53/259 - (20%)
Similarity:89/259 - (34%) Gaps:80/259 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   595 EIQEILRSKQQRSGSNASSPSASAAGTPRSSST----------LNAALHQAAQFVTPALIYSAQL 649
            |::|:||..|||. ..|......||.....::|          |:....|..|.....|...|.|
Mouse   269 EMEELLRGVQQRL-IQAPFQVTDAAVLNNVANTFGLMDAVKRVLDNRRKQVEQGEEQFLYTLADL 332

  Fly   650 QQQQQQQQQQHQ--RQQQQQSQHA-------------SRQSSPRSTN---------------DST 684
            ::|.::|::|.|  |.:.|..|:.             .|...|.||.               ...
Mouse   333 ERQLEEQKKQAQDPRLKSQTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPVQQPQFTVISPI 397

  Fly   685 TVAPIGDGGGGSSIASA------APLDLSSQPPAAKRFKAERRASSTATTATTATTGSSTSTPSP 743
            |:.|:|......:|..|      :|:.:.:.|...:.|:             .||..||..:.||
Mouse   398 TITPVGQSFSMGNIPVATLSQGSSPVTVHTLPSGPQLFR-------------YATVVSSAKSNSP 449

  Fly   744 PPLEQHDDINSGNANATLGTRSGTGTGESSAAGSGA-------------GVAKARRRCQAQSEE 794
            ..:..|       .:::|...|.|...:.|:.|:.|             |:..|.:..::.||:
Mouse   450 DTVTIH-------PSSSLALLSSTSMQDGSSLGNMATMVSPMELVAMESGLTSAIQAVESTSED 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 53/259 (20%)
SAM 795..852 CDD:197735 53/259 (20%)
Gmeb1NP_001116464.1 SAND 80..155 CDD:396076
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 360..384 4/23 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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