DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and Deaf1

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_058570.1 Gene:Deaf1 / 54006 MGIID:1858496 Length:566 Species:Mus musculus


Alignment Length:692 Identity:127/692 - (18%)
Similarity:212/692 - (30%) Gaps:269/692 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 ESSAKK--LSEAATGGAGGGGGGAAGQAATPTTSQLSAPASSASSSSMSSSSAGSTCTTNANTA- 178
            :|:||:  |:|||...|......||..||   .|:...|..|....|...:.:.:...|...|| 
Mouse     5 DSAAKQLGLAEAAAVAAAAAVAAAAAAAA---ESEAEEPVLSRDEDSEEDADSEAERETRRVTAV 66

  Fly   179 ---------------------SVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNNNNTINNNNS 222
                                 ..|||.|||               |.:.|:...|..::.:|..:
Mouse    67 AVMAAESGHMDMGTEALPSPDEAAAAAAAF---------------AEVTTVTVANVGSSADNVFT 116

  Fly   223 SSSSSSSIINNHQSSQPS---LGHSVKRER------------------------LSPGSNS---- 256
            :|.::::.|:.|..|..:   :|.|:..|:                        |:||..|    
Mouse   117 TSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIVETTGLKGPAAPLTPGPQSPPTP 181

  Fly   257 ----------------SSHNGELTVSSFARSRSATPSSSSYRGAGGGAGGGVSPSHQQQQQQQQQ 305
                            |.::.||.|      |....|.:.|:...|..|.|             :
Mouse   182 LAPGQEKGGTKYNWDPSVYDSELPV------RCRNISGTLYKSRLGSGGRG-------------R 227

  Fly   306 SLQQQQRLSPPSGPSMATATTTSSLSSSSSASASASASASAATHMPLHNLSTNLLNSIQQAAASQ 370
            .::|        |.:..:.|...:::..:|                    |.:...||:.|....
Mouse   228 CIKQ--------GENWYSPTEFEAMAGRAS--------------------SKDWKRSIRYAGRPL 264

  Fly   371 QQLRSS---NSNSSSNISGSSNNTKSDGGAASNATDFSTRNYSDIMRCLAAKYNNANPNDNNATR 432
            |.|...   |.:::|....:..:..:..|.......:..|...:.:.....|.::.         
Mouse   265 QCLIQDGILNPHAASCTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSP--------- 320

  Fly   433 RNSYYDGSTSATTATGGAGGGGGGAGGSNSAPSSALKTASSSTGSTTTTAKKLSPSAASAANSAA 497
            :|.....:|:|||.|              ..||..:           ||:..|:...||...:.|
Mouse   321 KNITLLPATAATTFT--------------VTPSGQI-----------TTSGALTFDRASTVEATA 360

  Fly   498 VSLSKESKVSAVGGAGVGGAVASSG--------------GGGSSMSQLAPPPTAPSPTEQAKSQM 548
            |.    |:..|.|....|..|..:|              .|.....|:||.|.|..||...|..:
Mouse   361 VI----SESPAQGDVFAGATVQEAGVQPPCRVGHPEPHYPGYQDSCQIAPFPEAALPTSHPKIVL 421

  Fly   549 AAVVAAA--------SVSPFMTNFLPFSSGIFPPLIDMSSTQALLTLARAVKDAEIQEILRSKQQ 605
            .::.|.|        :|||.:.      ||     ::||..::.|.|     :..:..:|.:.||
Mouse   422 TSLPALAVPPSTPTKAVSPTVV------SG-----LEMSEHRSWLYL-----EEMVNSLLNTAQQ 470

  Fly   606 RSGSNASSPSASAAGTPRSSSTLNAALHQAAQFVT--PALIYSAQLQQQQQQQQQQ--------- 659
                                  |.....||.|..:  .|.:..|::|...::::|.         
Mouse   471 ----------------------LKTLFEQAKQASSCREAAVTQARMQVDTERKEQSCVNCGREAM 513

  Fly   660 ------H---------QRQQQQQSQHASRQSSPRSTNDSTTV 686
                  |         ||:..:..||...||:      |.||
Mouse   514 SECTGCHKVNYCSTFCQRKDWKDHQHVCGQSA------SVTV 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978
SAM 795..852 CDD:197735
Deaf1NP_058570.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..62 6/31 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..191 4/27 (15%)
SAND 199..273 CDD:279658 19/120 (16%)
Nuclear localization signal. /evidence=ECO:0000255 300..306 1/5 (20%)
Interaction with LMO4 404..479 23/112 (21%)
zf-MYND 505..541 CDD:280009 5/35 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4333
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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