DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and Scm

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster


Alignment Length:967 Identity:176/967 - (18%)
Similarity:291/967 - (30%) Gaps:366/967 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 SSSSMSSSSAGSTCTTNANTASVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNNNNTINNNNS 222
            ||:|..|:||....:|||.:::.|:|                                    :::
  Fly     7 SSTSSGSNSAAPGASTNATSSASASA------------------------------------SST 35

  Fly   223 SSSSSSSIINNHQSSQPSLGHSVKRER--------------LSPGSNSSSHNGELTVSSFARS-- 271
            |:|:|.....:..|:|...|...||..              |...:.......|..::.|.::  
  Fly    36 STSASPGSTTSPASTQRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYS 100

  Fly   272 -----------RSATPS---------------SSSYRGAGGGAGGGVSPSHQQQQQQQQQSLQQQ 310
                       |...|:               :.|.|.:||.|.|              :.|.:.
  Fly   101 KGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGSASG--------------KGLAES 151

  Fly   311 QR------LSPPSGP----SMATATTTSSLSSSSSASASASASASAAT--------HMPL----- 352
            :|      ...|:||    |.......:.|..:.|.:|.|.....|..        .|.|     
  Fly   152 ERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDP 216

  Fly   353 HNLSTNLLNSIQQAAASQQQLRSSNSNSSSNISGSSNNT--------KSDGGAASNATDFSTRNY 409
            .|:::..:.::.....|:.:||...|:|.::.....::|        :.:||.......| ..|.
  Fly   217 RNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGF-RMNA 280

  Fly   410 SDIMRCLAAKYNNA-------------NPNDN--------------------------------- 428
            |.....|....|||             .|.:|                                 
  Fly   281 SSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIH 345

  Fly   429 --------------NATRRNSYYDGSTSATTATGGAGGGGGGAGGSNS------------APSSA 467
                          |...|:.:..|..:.:.......|.......|:|            |.|.|
  Fly   346 VTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEA 410

  Fly   468 LKTASSS-----------------------TGSTTTTAKKLSPSAASAANSAAVSLSK-----ES 504
            :..||.:                       ||.|..|..||......||::....|||     |.
  Fly   411 MVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAKLCLQEVLAASTDTQQLSKLLFALEG 475

  Fly   505 KVSAVGGAGVGGAV------------------------------------------ASSGGGGSS 527
            .|..|..||....|                                          ..:......
  Fly   476 DVHIVTAAGKNFTVKIPSPMRMKDDESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQ 540

  Fly   528 MSQLAPPPTAPSPTEQAKSQMAAVVAAASVSPFMTNFLPFSSGIFPPLIDMSSTQALLTLARAVK 592
            ::|.|.||::|...::...|.    .:|:.||                     ::.::....|||
  Fly   541 LTQSATPPSSPVLADKRNRQS----NSATTSP---------------------SEKIIKQELAVK 580

  Fly   593 DAEIQEILRSKQQRSGSNASSPSASAAGTPRSSSTLNAALHQAAQFVTPALIYS------AQLQQ 651
            ..     :.||.:.|.:|...|    |....|:.:||...:.|::.....:|.|      ||...
  Fly   581 SP-----VESKSKTSTNNGKEP----ASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSS 636

  Fly   652 QQQQQQQ---QHQ------------RQQQQQSQHAS-RQSSPRSTNDSTTVAPIGDGGGGSSIAS 700
            ..|..::   ||.            .|...|:.|.| ...|..||:.||::|      |||:..|
  Fly   637 TTQALRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLA------GGSANTS 695

  Fly   701 A-----APLDLSSQPPAAKRFKAERRASSTATTATTATTGSSTSTPSPPPLEQHDDINSGNANAT 760
            .     |||.....|..|....:.....|..|.:::|:..:|.|||.           :|..:|:
  Fly   696 TIGKYLAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPF-----------TGCQSAS 749

  Fly   761 LGTRSGTGTGESSAAGSGAGVA--------------------KARRRCQAQSEEVNSWSVDDVCG 805
            ....:..|...:.||.:.||.|                    .|......:|:.:: |::::|..
  Fly   750 STALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSHLRSQPID-WTIEEVIQ 813

  Fly   806 FVGGID-ICAEYVQSFRDQSIDGTGLPLLTEDHLVNSLGMKLGPALKLRSILAKKLG 861
            ::...| ..|.:...||...|||..|.||..:.::..:|:|||||||:.:::.|..|
  Fly   814 YIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLVNKVNG 870

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 22/68 (32%)
SAM 795..852 CDD:197735 19/57 (33%)
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 5/39 (13%)
MBT 178..273 CDD:214723 16/94 (17%)
MBT <312..382 CDD:214723 4/69 (6%)
DUF3588 418..524 CDD:288954 17/105 (16%)
SAM_Scm 800..870 CDD:188977 22/70 (31%)
SAM 806..867 CDD:197735 20/60 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.