DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and phc2b

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_957496.3 Gene:phc2b / 394177 ZFINID:ZDB-GENE-040426-1113 Length:890 Species:Danio rerio


Alignment Length:1001 Identity:204/1001 - (20%)
Similarity:310/1001 - (30%) Gaps:391/1001 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 GAIESSAKKLSEAATGGAGGG-----GGGAAGQAATPTTSQLSAPASSASSSSMSSSSAGSTCTT 173
            ||..:..|.|......|:.|.     ||...|:.:||.       ||::|::..|:|:..||.||
Zfish     9 GARAAPQKSLRRVWQRGSRGSKVKHRGGTMEGEQSTPA-------ASASSTTGTSTSTTNSTGTT 66

  Fly   174 NANTASVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNNNNTINNNNSSSSSSSSIINNHQSSQ 238
            :|:|||.|                                       :|:|||:||         
Zfish    67 SASTASTA---------------------------------------SSTSSSTSS--------- 83

  Fly   239 PSLGHSVKRERLSPGSNSSSHNGELTVSSFARSRSATPSSSSYRGAGGGAGGGVSPSHQQQQ--- 300
                   .|:.:...|..|......||....::.:..||:::              .:.||.   
Zfish    84 -------ARQAVPQISVYSGIPDRQTVQVIQQALNRQPSTAA--------------QYLQQMYAA 127

  Fly   301 QQQQQSLQ----QQQRLSPPSGPSMATATTTSSLSSSSSASASASASASAATHMPLHNLSTNLLN 361
            |||...||    |||.||.....|:|.....|..:...|::.:.::|..:.:.....||:|:   
Zfish   128 QQQHLMLQTAALQQQHLSTAQLQSLAAVQQASLAAGRQSSNQNGTSSTQSGSSQTTINLTTS--- 189

  Fly   362 SIQQAAASQQQLRSSNSNSSSNISGSSNNTKSDGGAASNATDFS------------TRNYSDIMR 414
                .||:|...|:.:.||:.  ||.|......|.|:|:....|            ..|...:.|
Zfish   190 ----PAAAQLISRAQSVNSAP--SGISQQAVLLGNASSSTLTASQAQMYLRAQMAQQSNLVHVAR 248

  Fly   415 CL------------------AAKYNNANPNDN---------NATRRNSYYDGSTSATTATGGAGG 452
            .|                  .|..::.|..:|         |...||  :.|.:|...|||    
Zfish   249 SLGRAVPLSSQLILAPTATVTALQSDTNTTNNTQSASAQVQNLALRN--HQGVSSTPQATG---- 307

  Fly   453 GGGGAGGSNSA-----------PSSALKTASSSTGSTTTTAKKLSPSAASAANSAAVSLSKESKV 506
                    ..|           |:..:||.|.|||:        ..:..:||:|..|..::|.:.
Zfish   308 --------LQALSLKQTPVSIQPTPLIKTPSQSTGA--------GKNNLNAASSDGVKKAEEGQT 356

  Fly   507 SAVGGAGVGGAVASSGGGGSSMSQLAPPPTAPSPTEQAKSQMAAVVAAASVSPFMTNFLPFSSGI 571
            ..       .||..|....||...:||......|....|.|....|.....:|        :|..
Zfish   357 EM-------KAVNMSRNVSSSHPLIAPAYAQIQPQALIKQQPQQFVIQPQATP--------TSRS 406

  Fly   572 FPPLIDMSSTQ-----ALLTLARAVKDAEIQEIL----RSKQQRSGSNASSPSASAAGTPRSSST 627
            .|.|:..:|.|     |.|.:..:.:.:.:..|:    :......|| |.:..|:...:..|...
Zfish   407 QPQLLQTASIQPHQQTASLGIPSSAQTSTVTGIIPVLPKPALHNQGS-AQTQQATIFHSTVSHHA 470

  Fly   628 LNAALHQAAQFVTPALIYSAQLQQQQQQQQQQHQRQQQQQSQHASR------QSSPRSTNDST-- 684
            ..|..|..||.|....| :.|:|..|.|..:..|..:::.:....|      |..|.:|...|  
Zfish   471 HTALAHAKAQPVQLTAI-NLQIQPAQNQASRLAQDDKEKPTSLVLREICPPVQIHPSTTTQGTDP 534

  Fly   685 -------TVAPIGDGGG---------GSSIASAAPLDLSSQPP---------------------- 711
                   ||.......|         |:.:.|:....:||:||                      
Zfish   535 PEQSKADTVNATSQTQGSVETAREPTGAQLTSSMTSAVSSEPPPAAVMGNTTQNGENKPPQAIVK 599

  Fly   712 ---------------AAKRFKAER---------------------RASSTATTATTATTGSS--- 737
                           .|:.|..||                     .|||.:.:||.:.|..:   
Zfish   600 PHVLTHVIEGFVIQEGAEPFPVERPPVAAESPKKPDTQLPSDPEKTASSNSLSATNSDTEEAGQQ 664

  Fly   738 -------TSTPS------------------------------------------PPPLEQHDDIN 753
                   |..|.                                          |...:..:.||
Zfish   665 DTRVEEETEKPKLTCELCGWVDFAHKFKRSKRFCSMVCAKRYSVSCTKRVGLFRPDRTKSTNQIN 729

  Fly   754 -------------------------SGNANATLGTRSGTGTGES----------------SAAGS 777
                                     |...:.:...:|....|||                |||.|
Zfish   730 QWRRRRSHSPRGREAKKQRLSVSQQSQGESISSPLQSQPSQGESSPCSDISSYEEATSPLSAASS 794

  Fly   778 G----AGVAKARRRCQAQSEEV------------NSWSVDDVCGFVGGIDICAEYVQSFRDQSID 826
            |    .||..|.     :.||:            ..|:|.:|..|:..:..|.|....||.|.||
Zfish   795 GPVVSQGVVAAN-----EPEELPLLSQHFLPCDPTKWNVQEVFEFIRSLPGCQEIADEFRAQEID 854

  Fly   827 GTGLPLLTEDHLVNSLGMKLGPALKL 852
            |..|.||.||||::::.:|||||||:
Zfish   855 GQALLLLKEDHLMSAMNIKLGPALKI 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 26/70 (37%)
SAM 795..852 CDD:197735 25/68 (37%)
phc2bNP_957496.3 TFIIA 389..>554 CDD:281188 35/174 (20%)
PHC2_SAM_assoc 708..820 CDD:293222 18/116 (16%)
SAM_Ph1,2,3 822..889 CDD:188976 26/59 (44%)
SAM 823..890 CDD:197735 26/58 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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