DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and Phc1

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:XP_006237362.1 Gene:Phc1 / 312690 RGDID:1309203 Length:1045 Species:Rattus norvegicus


Alignment Length:1095 Identity:213/1095 - (19%)
Similarity:324/1095 - (29%) Gaps:413/1095 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ETTVVWPAWCYSGNAPTDILQQKPAKATTAI-VGGRSAAQPATHDDQEAATTASTATKRKHLERL 70
            :.|:.......|.|:.|  .||:.|....:| :...||||..:.....::.:|:|.|:...|...
  Rat   105 QATIAASRQASSPNSST--AQQQTATTQASINLATTSAAQLISRSQSVSSPSATTLTQSVLLGNT 167

  Fly    71 ASD----------LR-QLGKKGRRSRSVS------------------------PCSRYPAV---A 97
            .|.          || |||...:.:|::.                        |.::.|.|   |
  Rat   168 TSPPLNQSQAQMYLRPQLGNLLQVNRTLGRNVPLASQLILMPNGAVAAVQQEVPPAQSPGVHADA 232

  Fly    98 ETARMLSERSLLLSGYG-AIESSAKK-----------LSEA----------------------AT 128
            :..:.|:.|:...|..| .|..|.:|           ||:|                      |.
  Rat   233 DQVQNLAVRNQQASAQGPQIPGSTQKAIPPGASPVSGLSQASSQALAVAQASGASGQSLNLSQAG 297

  Fly   129 GGAG---------GGGG---GAAGQ------------------------AATPTTSQ------LS 151
            ||:|         ||||   |..||                        |.|.|.||      .|
  Rat   298 GGSGNSLPGSMGPGGGGQAPGGLGQLPSSGLAGGNCPRKGTGVVQPLPAAQTVTVSQGSQTEAES 362

  Fly   152 APASSASSSSMSSSSAGSTCTTNANTA-SVAAAYAAFYLEKVKHEKMDNHKDAPMVTIHNNNNNN 215
            |.|..|.....|..|.|...|..|..| |.....:|.|.:...|..:...:.     ||......
  Rat   363 AAAKKAEGDGSSQQSVGMNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQ-----IHLQQKQV 422

  Fly   216 TINNNNSSSSSSSSIINNHQSS----QPSLGHSVKRERLSPGSNSSSHNGELTVSSFARSRSATP 276
            .|         ...|..:||..    |..|.|:....:|:..........:              
  Rat   423 VI---------QQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQ-------------- 464

  Fly   277 SSSSYRGAGGGAGGGVSPSHQQQQQQQQQSLQQQQRLSPPSGPSMATATTTSSLSSSSS------ 335
                              ..|||||||||..||||:.:..:.|.......|..:..|.|      
  Rat   465 ------------------QQQQQQQQQQQQQQQQQQATTLAAPQPPQVPPTQQVPPSQSQQQAQT 511

  Fly   336 ----------------------------------------ASASASASASAATHMPLHNLSTNLL 360
                                                    .:|..||:.....|:|:..:.|...
  Rat   512 LVVQPMLQSSPLSLPPEPTPKPPIPIQSKPPVAPIKPPQLGAAKMSATQQPPPHIPVQVVGTRQP 576

  Fly   361 NSIQQAAASQQQLRSSNSNS----------SSNISGSSNNTKSDGGAASNATDFSTRNYSDIMRC 415
            .:.|..|....||.::...|          .::::.|..::::.|.               :..|
  Rat   577 GTAQAQALGLAQLAAAVPTSRGMPGAVQPGQAHLASSQPSSQAPGA---------------LQEC 626

  Fly   416 LAAKYNNANPNDNNATRRNSYYDGSTSATTA--TGGAGGGGGGAGGSN----SAPSSALKTASSS 474
            ..|.                    :|..|.|  .|.|....||...|:    ..|::....:...
  Rat   627 PPAL--------------------ATGMTLAPVQGTAHVVKGGPTASSPVVAQVPAAFYMQSVHL 671

  Fly   475 TGSTTTTAKK------------------LSPSAASAANSAAVSLSKESKVSAVGGAGVGGAVASS 521
            .|...|.|.|                  |...|:.||.|..|...|.|.|..      ...|||.
  Rat   672 PGKAQTLAVKRKAESEEEREDLSALGSVLPTKASPAAESPKVIEEKNSLVEK------AEPVASL 730

  Fly   522 GGG--GSSMSQLAPPPTAPSPT--------EQAKSQMAAV------------VAAASVSPF---M 561
            ...  .|.:..|||.|:||.||        ..:|...|.|            |......||   .
  Rat   731 NANPPNSDLVALAPTPSAPPPTLALVSRQMGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFPVGC 795

  Fly   562 TNFL-----PFSSGIFP----------------PLIDMSSTQALLTLARAVKDAEIQEILRSKQQ 605
            :.||     |..:|: |                |.:|:.....||......|.|..::...||:.
  Rat   796 SQFLKETEKPLPAGL-PTGLNESQSGGPLGGDSPCVDLDKKANLLKCEYCGKYAPAEQFRGSKRF 859

  Fly   606 RSGSNASSPSASAAGTPRSSSTLNAALHQAAQFVTPALIYSAQLQQQQQQQQQQHQRQQQQQSQH 670
            .|.:.|...:.|.:...|..........:|:        |:...::..::......|.:.|..:|
  Rat   860 CSMTCAKRYNVSCSHQFRLKRKKMKEFQEAS--------YARVRRRGPRRSSSDIARAKIQGKRH 916

  Fly   671 ASRQSSPRSTNDST---TVAPIGDGGGGSSIASAAPLDLSSQPPAAKRFKAERRASSTATTATTA 732
            ..::.|.|.:::|:   .::|...|                 |.:.:....||...:|.|     
  Rat   917 RGQEDSSRGSDNSSYDEALSPTSPG-----------------PLSVRAGHGERDLGNTIT----- 959

  Fly   733 TTGSSTSTPSPPPLEQHDDINSGNANATLGTRSGTGTGESSAAGSGAGVAKARRRCQAQSEEVNS 797
                   |||.|.|:..:.:                                     ..|...:.
  Rat   960 -------TPSTPELQGINPV-------------------------------------FLSSNPSQ 980

  Fly   798 WSVDDVCGFVGGIDICAEYVQSFRDQSIDGTGLPLLTEDHLVNSLGMKLGPALKL 852
            |||::|..|:..:..|.|..:.||.|.|||..|.||.|:||::::.:|||||||:
  Rat   981 WSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKI 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 26/58 (45%)
SAM 795..852 CDD:197735 25/56 (45%)
Phc1XP_006237362.1 zf-FCS 833..868 CDD:283998 8/34 (24%)
PHC2_SAM_assoc 869..975 CDD:293222 22/179 (12%)
SAM_Ph1,2,3 976..1044 CDD:188976 26/60 (43%)
SAM 978..1045 CDD:197735 26/58 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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