DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and PHC2

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_001372041.1 Gene:PHC2 / 1912 HGNCID:3183 Length:881 Species:Homo sapiens


Alignment Length:951 Identity:192/951 - (20%)
Similarity:290/951 - (30%) Gaps:375/951 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 MDNHKDAPMVTIHNNNNNNTINNNNSSSSSSSSIINNHQSSQPSLGHSVKRERLSPGSNSSSHNG 261
            |:|....|      :.:::....:::|.:||||..||  ||....|...       |...|.::|
Human     1 MENELPVP------HTSSSACATSSTSGASSSSGCNN--SSSGGSGRPT-------GPQISVYSG 50

  Fly   262 ---ELTVSSFARSRSATPSSSSYRGAGGGAGGGVSPSHQQQQ---QQQQQSLQ----QQQRLSPP 316
               ..||....::....||:::              .:.||.   |||...||    |||.||..
Human    51 IPDRQTVQVIQQALHRQPSTAA--------------QYLQQMYAAQQQHLMLQTAALQQQHLSSA 101

  Fly   317 SGPSMATATTTSSLSSSSSASASASASASAATHMPLHNLSTNLLNSIQQAAASQ--QQLRSSNSN 379
            ...|:|.....|.:|:...:::.::.||.|    |..:.|.||..|   .||:|  .:.:|.||.
Human   102 QLQSLAAVQQASLVSNRQGSTSGSNVSAQA----PAQSSSINLAAS---PAAAQLLNRAQSVNSA 159

  Fly   380 SSSNISGSS---NNTKSDGGAASNATDF------STRNYSDIMRCLAAKYNNA-----NPNDNNA 430
            ::|.|:..:   .||.|....||.|..:      ...|...:.|.|......:     .|....|
Human   160 AASGIAQQAVLLGNTSSPALTASQAQMYLRAQMAQPGNLVQVARSLGGTVPLSPQLIFTPTATVA 224

  Fly   431 TRRNSYYDGS-------------TSATTATGGAGGGGGGAGGSNSAPSSALKTASSSTGSTTTTA 482
            |.:.....||             |..|..| .|....|........||.|||.....:....|.|
Human   225 TVQPELGTGSPARPPTPAQVQNLTLRTQQT-PAAAASGPTPTQPVLPSLALKPTPGGSQPLPTPA 288

  Fly   483 KKLSPSAASAANS---AAVSLSKESKVSAVGGAGVGGAVASSGGGGSSMSQLA------------ 532
            :..:.:.||.|.:   .|.|:.:..| ...|.:.|.|::....|...::..:|            
Human   289 QSRNTAQASPAGAKPGIADSVMEPHK-KGDGNSSVPGSMEGRAGLSRTVPAVAAHPLIAPAYAQL 352

  Fly   533 ------------------------------PPPTAPSPTEQAK--SQMAAVVAAASVSPF----- 560
                                          |||....|..||:  .|:|:|..:.::.|.     
Human   353 QPHQLLPQPSSKHLQPQFVIQQQPQPQQQQPPPQQSRPVLQAEPHPQLASVSPSVALQPSSEAHA 417

  Fly   561 -----MTNFLPF------------SSGIFPPLID-------------------MSSTQALLTLAR 589
                 :|..||.            |....||..|                   ..::..:|.|..
Human   418 MPLGPVTPALPLQCPTANLHKPGGSQQCHPPTPDTGPQNGHPEGVPHTPQRRFQHTSAVILQLQP 482

  Fly   590 A-------VKDAEIQEILRSK----QQRSGSNASSPSASAAGT--------PRSSSTLNAALHQA 635
            |       |.| :.:|:...:    :.|||   .||...|..|        |.|.:...:..|:.
Human   483 ASPVPQQCVPD-DWKEVAPGEKSVPETRSG---PSPHQQAIVTAMPGGLPVPTSPNIQPSPAHET 543

  Fly   636 AQFVTPALIYSAQLQQQQQQQQQQHQRQQQQQSQHASRQSSPRSTNDSTTVAPIGDGGGGSSIAS 700
            .|.:..||                            :..|||..|:        |:|...||||.
Human   544 GQGIVHAL----------------------------TDLSSPGMTS--------GNGNSASSIAG 572

  Fly   701 AAPLDLSSQPPA----------------------------------------------------- 712
            .||.:..::||.                                                     
Human   573 TAPQNGENKPPQAIVKPQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKKKYAQGFLPEKLPQQD 637

  Fly   713 ------------------------------------AKRFKAERRASSTATT------------- 728
                                                |.:||..:|..|.|..             
Human   638 HTTTTDSEMEEPYLQESKEEGAPLKLKCELCGRVDFAYKFKRSKRFCSMACAKRYNVGCTKRVGL 702

  Fly   729 -----ATTATTGSST------STPSPPPLEQHDDINSGNANATLGTRSG---TGTGESSAAGS-- 777
                 :.....|::|      |..|.|||.: |..........|...:.   |.:.|.|:..|  
Human   703 FHSDRSKLQKAGAATHNRRRASKASLPPLTK-DTKKQPTGTVPLSVTAALQLTHSQEDSSRCSDN 766

  Fly   778 ----------GAGVAKARRRCQAQSE---------------------EVNSWSVDDVCGFVGGID 811
                      .|..:.:||| |.|.:                     |...|:|:||..|:..:.
Human   767 SSYEEPLSPISASSSTSRRR-QGQRDLELPDMHMRDLVGMGHHFLPSEPTKWNVEDVYEFIRSLP 830

  Fly   812 ICAEYVQSFRDQSIDGTGLPLLTEDHLVNSLGMKLGPALKL 852
            .|.|..:.||.|.|||..|.||.||||::::.:|||||||:
Human   831 GCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKI 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 27/58 (47%)
SAM 795..852 CDD:197735 26/56 (46%)
PHC2NP_001372041.1 PHA03247 <116..571 CDD:223021 98/503 (19%)
PHC2_SAM_assoc 693..812 CDD:406912 19/120 (16%)
SAM_Ph1,2,3 812..880 CDD:188976 28/60 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
11.100

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