DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and phc2a

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:NP_694490.2 Gene:phc2a / 171465 ZFINID:ZDB-GENE-020312-1 Length:827 Species:Danio rerio


Alignment Length:920 Identity:178/920 - (19%)
Similarity:301/920 - (32%) Gaps:314/920 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 GAAGQAATPTTSQLSAPASSASSSSMSSSSAGSTCT---------TNANTASV--------AAAY 184
            |:...:|:.|....::.::|.|:.::|:||:.....         |:..|..|        .:..
Zfish     8 GSVASSASVTIPSTTSVSTSTSAGTLSNSSSRQQTVPQISVYGGITDRQTVQVIQQALNRQPSTV 72

  Fly   185 AAFYLEKV-----------------KHEKMDNHKDAPMV------TIHNNNNNNTINNNNSSSSS 226
            ||.||:::                 :|..:...:.|.:|      :.|.:.:..|:        :
Zfish    73 AAQYLQQMYAAQQQHLMLQTAALQQQHLSLAAVQQASIVAGRQSCSQHGSTSQQTV--------A 129

  Fly   227 SSSIINNHQSSQPSLGHSVKRERLSPGSNSSSHNGELTVSSFARSRSATPSSSSYRGAGGGAGGG 291
            |.:.||  .::.|:..|.:.|.:  .||:.....|:..|   ....|:||:.::.:         
Zfish   130 SQTTIN--LATSPAAAHLISRAQ--SGSSVPVCIGQQAV---LLGNSSTPTLTASQ--------- 178

  Fly   292 VSPSHQQQQQQQQQSLQQQQRLSPPSGPSMATATTTSS-LSSSSSASASA---SASASAATHMPL 352
             :..:.:.|..||.:|.|..|       |:..|...|| |..:.:||.:|   .|.|.:...:|.
Zfish   179 -AQMYLRAQMAQQTNLVQVAR-------SLGRAVPLSSQLIFTPTASVTAIQPEAPAPSINTLPT 235

  Fly   353 HNLSTNLLNSIQQAA----ASQQQLRS-SNSNSSSNISGSSNNTKSDGGAASNATDFSTRNYSDI 412
            .....||....||.|    .||.||:| |...|.::::|.|                       :
Zfish   236 SGQVQNLALRSQQGALTSTLSQSQLQSLSVKQSVASVTGQS-----------------------V 277

  Fly   413 MRCLAAKYNNANPNDNNATRRNSYYDGSTSATTATGGAGGGGGGAGGSNSAPSSALKTASSSTGS 477
            .|   .|...|.|:..                          |.|..::.|.:|:..||.:...|
Zfish   278 AR---LKGLGAEPSPQ--------------------------GTAAKASPAETSSETTAKNDKTS 313

  Fly   478 TTTTAKKLSPSAASAANSAAVS--------------------LSKESKVSAVGGAGVGGAVASSG 522
            ..||:  :.||..|.|....:|                    :.::.::...|.|.:..|.|...
Zfish   314 DLTTS--VCPSVTSVAGHPFISTAYTQIQTHQLLQQHKQQFVIQQQPQILQRGQAQLLEAAAIHP 376

  Fly   523 GGGSSMSQLAPPPTAPS-------PTEQAKSQMAAVVAAASVSP----------FMTNF------ 564
            ....:::..:..|..|.       |......|.|.:..:.:||.          .:||.      
Zfish   377 HTVQAVAIQSALPAQPQQCPIPLLPKVPVTCQQATIFHSTTVSQQALAQNGQAHILTNTKAPPLQ 441

  Fly   565 ----------LPFSSGIFPPLIDMSSTQALL---TLARAVKDAEIQEILRS------KQQRSGS- 609
                      :....|:....:....|..||   .|:..:::....|:.:|      |:...|| 
Zfish   442 LTAVKCQIHPVQIQQGVASQNVPDKDTPVLLEPQLLSIPIQEPTRTELRQSDKESQVKENTQGSV 506

  Fly   610 ----NASSPSASAAGTPRSSSTLNAALHQAAQ--------------------FV----------- 639
                ...||.|..:|:..::.|:..:..|..:                    ||           
Zfish   507 NVKAGVGSPPAMTSGSGNNAPTVTGSAPQNGESKPPPQAVVKPQILTHVIEGFVIQEGAEPFPVE 571

  Fly   640 TPALIYSAQLQQQQQ---QQQQQHQRQQQQQS---QHASRQSSP-----------------RSTN 681
            .|:|:.. .|:|:|.   ...|:|....:.:.   |..:.|..|                 ||..
Zfish   572 RPSLLIE-NLKQKQHHAYSDLQKHNADSEMEDLSLQELNNQPEPVRTCEFCGNVDFAFNFKRSKR 635

  Fly   682 DSTTVAPIGDGGGGSSIASAAPLDLSSQPPAAKRFKAERRASSTATTAT-------TATTGSSTS 739
            ..:||.......|.:......|  ..|.|...|:.||...:....:|.|       ..|||:|..
Zfish   636 FCSTVCAKRYNVGCTKRMGLFP--GKSSPEDTKKPKASDESPKNCSTETRKRNPSIQTTTGASLL 698

  Fly   740 TPSPPPLEQHDDINSGNANATLGTRSGTGTGESS--------------AAGSGAGVAKARRRCQA 790
            :|.|                     |....||||              .:.|..|..........
Zfish   699 SPHP---------------------SHPSHGESSQCSDMSSYEEPISPLSNSSFGAPIEHEESFD 742

  Fly   791 QSEEV-------------NSWSVDDVCGFVGGIDICAEYVQSFRDQSIDGTGLPLLTEDHLVNSL 842
            .|.|:             ..|:|:||..|:..:..|.|..:.||.|.|||..|.||.||||::::
Zfish   743 HSRELTPLLTQHFLASDPTKWNVEDVYEFICSLPGCHEIAEEFRSQEIDGQALMLLKEDHLMSTM 807

  Fly   843 GMKLGPALKL 852
            .:|||||||:
Zfish   808 NIKLGPALKI 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 27/71 (38%)
SAM 795..852 CDD:197735 26/69 (38%)
phc2aNP_694490.2 Disordered. /evidence=ECO:0000250|UniProtKB:Q9QWH1 1..78 14/69 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 282..316 9/59 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..545 11/62 (18%)
HD1 540..570 2/29 (7%)
PHC2_SAM_assoc 646..756 CDD:293222 24/132 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 653..730 19/99 (19%)
SAM_Ph1,2,3 758..826 CDD:188976 27/60 (45%)
SAM 760..827 CDD:197735 27/58 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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