DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Samuel and phc3

DIOPT Version :9

Sequence 1:NP_001260372.1 Gene:Samuel / 34530 FlyBaseID:FBgn0032330 Length:968 Species:Drosophila melanogaster
Sequence 2:XP_004914480.1 Gene:phc3 / 100496983 XenbaseID:XB-GENE-6258800 Length:973 Species:Xenopus tropicalis


Alignment Length:1076 Identity:204/1076 - (18%)
Similarity:330/1076 - (30%) Gaps:346/1076 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IDTETTVVWPAWCYSGNAP------------TDILQQ---KPAKATTAIVGGRSAAQPATHDDQE 53
            |.|.:.........|.|.|            ..::||   :|..:....:....:||      |:
 Frog     7 ITTSSATATTTTSSSANPPPISVYGSSDRHAVQVIQQALNRPTSSAAQYLQQMYSAQ------QQ 65

  Fly    54 AATTASTATKRKHLE----RLASDLRQLGKKGRR-------------------SRSVSP-----C 90
            .....:.|..::||.    :..|.::|....|.|                   ..|.||     .
 Frog    66 HLMLQTAALHQQHLNSSPLQTISSVQQSNVTGERPSISSVSTTQQSNAPQTSIQLSTSPPPPQLL 130

  Fly    91 SRYPAVAETARMLSERSLLLSGYGAIESSAKKLSEAATGGAGGGGGGAAGQAATPTTSQ--LSAP 153
            ||....:.|:..::::::||.      |::..||              |.||.....:|  :..|
 Frog   131 SRSQTSSTTSSSITQKTVLLG------STSPTLS--------------ASQAQMYLRAQMLIFTP 175

  Fly   154 ASSAS---------SSSMSSSSAGSTCTTNANTASVAAAYAAFYLEKVKHEKMDNHKDAPMVTIH 209
            |::.:         |||.||||:..:.|.|....|......:|   ........:::|.|:...|
 Frog   176 AATVAAVQSDIPVISSSSSSSSSCQSATQNLTIRSQPMLEMSF---PNNSPPKPSNQDQPLAICH 237

  Fly   210 NN--------NNNNTINNNNSSSSSSSS--------IINNHQSSQPSLGHSVKRERLSPGSNSSS 258
            ..        :.:.|:.||..:.||.|.        ..|.||             .::|.|.|:.
 Frog   238 KTTVASSKTIHTDATMENNQKNDSSMSDSRCTAVTRTSNIHQ-------------LIAPVSYSTV 289

  Fly   259 HNGELTVSSFARSRSATPSSSSYRGAGGGAGGGVSPSH----QQQQQQQQQSLQQQQR------- 312
            |         :.|....|:.|            :.|.|    ||...||||.:|.:.:       
 Frog   290 H---------SHSLGKHPAIS------------ILPDHPKLPQQVILQQQQQIQHRHQIQTITLH 333

  Fly   313 ---LSPPSG--------------PSMA----TATTTSSLSSSSSASASASASASAA--------- 347
               |.|||.              ||.|    ....|::||...:.|..|..|...:         
 Frog   334 NSALEPPSTQHCVPMQSQSFVHIPSSAHSHHCTPVTTALSPPPTISQPAQPSVVVSPPPPHSPCQ 398

  Fly   348 -----------------------------THMPLH---------NLSTNLLNSIQQAAASQQQLR 374
                                         .|.||.         :|||:|..::......|..|.
 Frog   399 SPTIIIHPQAIIQPQTSLLVQSTLPTRDNLHHPLQTTLHSAPQMSLSTHLPPTLSSGPHQQHALV 463

  Fly   375 SSNSNSSSNIS---------------GSSNNTKSDGGAASNATDFSTRNYSDIMRCLAAKYNNAN 424
            ||:....|.||               .||.:..:...:...|....:      |:.:..:.....
 Frog   464 SSSPQIISPISQTQQPEIQSIPTPTVASSPHLPTTPPSQLQALPLQS------MQTIPVQPEILT 522

  Fly   425 PND---NNATRRNSYYDGSTS------------ATTATG-----GAGGGGGGAGGSNSAPSSALK 469
            |..   .||.........:.:            .|.|..     .|..........|..|..|: 
 Frog   523 PGQVLMQNALLTEEELPAAEALVQLPFQTLPPPQTVAVNLHIQPAAVESPVVYQVENVCPEEAV- 586

  Fly   470 TASSSTG--STTTTAKKLSPSAASAANSAAVSLSKESKVSAVGGAGVGGAVASSGGGGSSMSQLA 532
            ......|  :.|.|...:.||....::...:......:|.....:.||.:|..|....|.||..|
 Frog   587 VQEDCVGVITQTRTPPTMLPSDLPESSGEGLPPDPTLRVLPSITSSVGASVIKSPSDTSHMSIPA 651

  Fly   533 PPPTAPSPTEQAKSQMA------------AVVAAASVSPFMTNFLPFSSGIFPPLIDMSSTQALL 585
            ||...|:.|.::...:.            |:|....::..:..|: ...|:.|..::.||    |
 Frog   652 PPLLLPAATTRSNRTLKPNSIPGLDKLPHAIVKPQILTHVIEGFV-IQEGVEPFPVNRSS----L 711

  Fly   586 TLARAVK--------DAEIQEILRSKQQRSGSNASSPSASAAGTPRSSSTLNAALHQAAQFVTPA 642
            .:.:|||        :..|.::....|    |:|..|. ::..|.....|..|......:....|
 Frog   712 LVEQAVKPLSPLDEGNLNIADMKSDIQ----SSAKLPD-NSTDTDMEDLTAEADCMDELECELLA 771

  Fly   643 LIYSAQLQQQQQQQQQQH-------QRQQQQQSQHASRQSSPRSTNDSTTV-APIGDGGGGSSIA 699
            ..:..:.....:.:|.:.       :|.....::......:.:::..|..| ..||..|..||.|
 Frog   772 CEFCGKTGYPNKFRQSERFCSLSCAKRYNANSTKQLGLFKANKTSRWSRKVDGSIGQRGRPSSSA 836

  Fly   700 -SAAPLDLSSQPPAAKRFKAE----RRASSTATTATTATTGSSTSTPS--------PPPLEQHDD 751
             |.....|..|.|.|..:.:|    .:..||..|.||.....|.....        .||.::..|
 Frog   837 GSVREHYLRQQLPTAYSYTSEALENSQEDSTRVTMTTRLRRQSEREREERQRRQMRKPPCQRSPD 901

  Fly   752 INSGNANATLGTRSGTGTGESSAAGSGAGVAKARRRCQAQSEEVNSWSVDDVCGFVGGIDICAEY 816
            ..:                                       |.:.|:|:||..|:..:..|.:.
 Frog   902 TQT---------------------------------------EPSLWTVEDVWAFIHALPGCHDI 927

  Fly   817 VQSFRDQSIDGTGLPLLTEDHLVNSLGMKLGPALKL 852
            ...||.|.|||..|.||.||||:.::.:|||||||:
 Frog   928 ADEFRTQEIDGQALLLLKEDHLMGTMNIKLGPALKI 963

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SamuelNP_001260372.1 SAM_Samd7,11 795..862 CDD:188978 26/58 (45%)
SAM 795..852 CDD:197735 25/56 (45%)
phc3XP_004914480.1 Atrophin-1 341..>648 CDD:367360 48/313 (15%)
SAM_Ph1,2,3 904..971 CDD:188976 27/99 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.