DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nup154 and nup155

DIOPT Version :9

Sequence 1:NP_001285827.1 Gene:Nup154 / 34527 FlyBaseID:FBgn0021761 Length:1365 Species:Drosophila melanogaster
Sequence 2:NP_956450.1 Gene:nup155 / 393125 ZFINID:ZDB-GENE-040426-711 Length:1391 Species:Danio rerio


Alignment Length:1433 Identity:471/1433 - (32%)
Similarity:763/1433 - (53%) Gaps:125/1433 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PQAQL-DFFTTATSMLEWHYNLERNKPGLLELTGVSQHGRATMSGLNDYDY--QSLSFLKSDRTH 65
            |.|.| :....::.:::.|...:|..|.|.||..|..|...::||::|.||  |..:.:.   ..
Zfish    10 PAAVLQEALENSSRLIDRHLQEDRCFPDLSELLNVPSHNMPSLSGVSDMDYPLQGPALIS---VP 71

  Fly    66 NLQQMRTVTKSAIPNEILEHFKHIKCHCTMGLFPEIGRAWLTIDSEIYIWTFNQTRDVAYYDGLS 130
            :|.::.::.:..:|.|::|.|.|::|:|.||:||||.|||||||:::::|.:....||||:||||
Zfish    72 SLPELSSIRRVPLPPELVEQFGHMQCNCMMGVFPEISRAWLTIDNDVFMWNYEDGSDVAYFDGLS 136

  Fly   131 HLIVSVGLVKPKPGVFVQDVKYLLVLTTPIEVIVLGVTF-------GESSYNEMQLMNRPVFVIG 188
            ..|:||||||||||:|...:.:||||.||::|::||::|       .:|:...|||:..|::.|.
Zfish   137 ETILSVGLVKPKPGIFQPHIHFLLVLATPVDVVILGLSFPKVQTGLNDSTCGAMQLLPDPLYTIP 201

  Fly   189 TDNVSISVIKGTDDGRIFLGGRDGCLYEIYYQAESSWFGKRCKKINLSQGLVSYMVPSFLKV-FS 252
            |||..:..|..||.||||:.|:||||||:.||||:.||.:||:|||.|:..:|:::||.|:. ||
Zfish   202 TDNTYLLAITSTDTGRIFMAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLSFLIPSLLQFSFS 266

  Fly   253 EVDPIEHIEIDNSRKLLYVLTEKGVIEAWDISTSYTTARRLGRITQNDITNQAVSLITTVDPSIF 317
            |.||:..|.:||||.:||..:||||::.:|:........|:..|:|:.|.:.|.::..|:|.|:|
Zfish   267 EDDPVVQIAVDNSRNILYTRSEKGVLQVYDLGADGQGMSRVAAISQSSIVSAAGNIARTIDRSVF 331

  Fly   318 KSVKAICPLSADDADKLHLVAVTQCGVRLFFSTTSLNVKQQFGPAVPCSPGENTGFGQPAVQPPL 382
            |.:..|..:...::....|:|||..||||:|||            :|.:|               
Zfish   332 KPIVQIAVIDRSESSDCQLLAVTHAGVRLYFST------------IPFAP--------------- 369

  Fly   383 SPNAE----APKGLYLLHVRLPPGYTPNATTNKPKQVHAAHYTEGTMLMITTQQHEQDLLWSLSS 443
             |||:    .|..|.|:|||||||::.::|..||.:||.|.|:.|.:||..:|..:.||||.::.
Zfish   370 -PNAKHVSARPSILALVHVRLPPGFSASSTLRKPAKVHKALYSRGVLLMAVSQTEDSDLLWCINH 433

  Fly   444 APSVNFTY---LVESTALESLDGVVWGLAEVHEPSTPQRKSPLNS------------ARH---AR 490
            .   :|.:   |:|:....::||..|.|..:.:..:|:..:|||.            .:|   .:
Zfish   434 D---SFPFKKPLMEAQMTVNVDGHSWALCSIEDKKSPRILTPLNKDLIPVTDSPLVVQQHNVPPQ 495

  Fly   491 KVALLTNQGTHIIEVLKMVDVLRQILLSCNGPHHEEVKMFFQSQNQREACVTALLLATSDTYRGS 555
            |..||:.||:||...|:.||.||.:|:|..|...||::.||:...:.:||.|||:||.|:.....
Zfish   496 KFVLLSAQGSHIFHKLRPVDQLRHLLVSSAGGESEEIERFFKLHREEQACATALILACSNAACDR 560

  Fly   556 DVALWAAQAFMLYGGEPCYQHQKFLNASNRNMANQTLGPNTTNVRERQSMFMSTPMPNS---VAN 617
            :|::||.:||..||||...:....|:|.:      .:||..::......|.:.:|:||.   ...
Zfish   561 EVSVWATRAFFRYGGEAQMRFPSALSAPS------NVGPLFSSPVPGSPMPIGSPLPNPSFLATP 619

  Fly   618 SPVGFPGSQFNQPISPIGNMQP---PQVAVSNENSPIVFSAKHDGLYMYVSRMLHSVWQMRCVNE 679
            :|..|| ...:.|..|...|.|   |..|||: ...:|||.||:|:.:|.:|:|.::|......|
Zfish   620 APGMFP-PNVSTPYVPATPMSPGGAPITAVSS-GPEVVFSGKHNGISIYFTRILGNIWDGSLAME 682

  Fly   680 Q-----------FCSNLSQSECALLLSDLRSLRSFLEVHSVHDISSTTRVSFDNHLD-------- 725
            .           ..|..|.|:..|:|..|:.|:.||:.:|....:|....:|.:..:        
Zfish   683 TPINKGTQTVMILESTASSSDLELVLMQLQDLKEFLDKNSQFSPTSLGVANFSSPANLQQRLLGF 747

  Fly   726 -RTNSYNTIMMGNTLLPIPEQRVLSEQAQVEETRSLSALNLFVKHACEVISLWNILNSHSFQLIC 789
             |.:..::..|...|     ||....:||..|..||.|:...:..:|:.::||.:|..|.|.||.
Zfish   748 MRPDGSSSQQMQQEL-----QRKYHTEAQAYEKASLQAMQQLIHRSCQTLALWKLLCDHQFSLIL 807

  Fly   790 VQLSPEHQKLLTCSTFRDLLITRSEVCAFLIISLINLYLKDAAGVSEVSKNLRENCPNLYRHEDD 854
            .::..|.|..:...:|:|:::...|:...||.:|||:|:||:|.|..:|.:||:.||.||..:|.
Zfish   808 SEMPKEFQDQMKAVSFKDVVVCGRELSGALITALINVYIKDSASVDTLSAHLRDICPLLYSSDDS 872

  Fly   855 VTYKATELLMNAKNCTSATEKEHMLRTTLHMCKEAAPTLPLHSICMQFISADFFEGVIELSAVCA 919
            :..||.|||.:::...|..|||..|:.:|.:.::.:....|..:|.|:....|:|||:||....|
Zfish   873 ICSKANELLQSSRQIQSKLEKERTLKESLRLYQQISHNTDLPLVCSQYRQVRFYEGVMELCLTAA 937

  Fly   920 SKSDPEEVGVHFYNNGEPADDREGYTCFATRMAYYKEVQLMLDHIYQRVCNKTHVQDKSINPLKG 984
            .|.|.:.:|:|||.||||.:|..|...|..|:..||.:...:..:..:  :|...|..|:....|
Zfish   938 DKKDHQRLGLHFYRNGEPEEDASGQQAFQERLLCYKCITDTMQELVNQ--SKAAPQSPSVPKQPG 1000

  Fly   985 TAKASDAKN-----GATQTIPKIVAHTLKVKDPLIHITLYEWLLAHDMLKELLDVVEPSLGEFLR 1044
            ....:...|     .|.....:::....:.:|.|.||.||.||:..|:..:||:|..|.|.:.|.
Zfish  1001 PPVMTSDPNMLGNEDAAAHFEQMLGLAQRSQDELFHIALYNWLIQADLTDKLLEVNSPYLEDHLM 1065

  Fly  1045 RSVSQNVDNVVLIDLLWKYYEKNSHHSQAAHILDNLAMTRSENINLEQRIEYLVRAVMCMRNGNV 1109
            ..:.|:...|..:||||:|||||....:|||:|..||...|..|:|:||:||:.||::..::.:.
Zfish  1066 HMIKQDQSKVRNMDLLWRYYEKNRSFGKAAHVLARLADMHSTEISLKQRLEYISRAILSAKSSSS 1130

  Fly  1110 GSSL-SNGIFLKELEDKLDIARVQKSVLAAMTELASDKLEAATAVKELNYALYDITQLYQHFAEP 1173
            .||| ::|.||.|||:|:::.|:|..:...:....|.......|:.:|:..|.|||:||..||:.
Zfish  1131 VSSLGADGEFLHELEEKMEVVRIQVQIQETLRRQFSQHPSVQGAITQLDSELMDITKLYGEFADH 1195

  Fly  1174 FDLWECQLSILNCSHHNDPLLIESVWGQII-----NSVVDKPGTTSERCNRLFTKIEILVREYGE 1233
            |.|.||:|:|::|:.|:||:|:.|:|.:||     :|||..|   |:|...:..|:..|.:.|..
Zfish  1196 FRLSECKLAIIHCAGHSDPILVHSLWQEIIEKELNDSVVMSP---SDRMRAVSLKLVSLGKVYAG 1257

  Fly  1234 SGVCFPFAFLIRELEVKACQLRFPEGIVPEKLVSMNLDIELLLEYYSRMISMNERVWANEGNEWH 1298
            :...||..||::.||.:.|:|.:..|.|...:..:.:.:..|||.|.::....:..|.......|
Zfish  1258 TPRYFPLDFLVKFLEQEVCRLNWDVGFVTFTMQEIGVQLPRLLEVYDQLFKTRDPCWQRLKKPLH 1322

  Fly  1299 LIQSVIRVVSLLADNAQSIWYRSKRRIVGKAQDIVAGCLNICYQKPDTNRLQ---HSLKELQSQL 1360
            |::.:..::|...|:...:....:||......|.:.|.|...........||   .:.|.||::|
Zfish  1323 LVECIHVLLSGYVDDPSRVPTYDRRRFTNACLDNICGYLVELQSLSPNAALQDIIRNFKSLQAKL 1387

  Fly  1361 QRL 1363
            ::|
Zfish  1388 EKL 1390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nup154NP_001285827.1 Nucleoporin_N 66..502 CDD:312364 177/465 (38%)
Nucleoporin_C <1018..1139 CDD:308677 49/121 (40%)
nup155NP_956450.1 Nucleoporin_N 72..507 CDD:285953 177/465 (38%)
Nucleoporin_C <1030..>1157 CDD:281208 53/126 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581715
Domainoid 1 1.000 341 1.000 Domainoid score I1057
eggNOG 1 0.900 - - E1_COG5308
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H43155
Inparanoid 1 1.050 777 1.000 Inparanoid score I512
OMA 1 1.010 - - QHG55643
OrthoDB 1 1.010 - - D140051at2759
OrthoFinder 1 1.000 - - FOG0004471
OrthoInspector 1 1.000 - - oto41006
orthoMCL 1 0.900 - - OOG6_102040
Panther 1 1.100 - - LDO PTHR10350
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R808
SonicParanoid 1 1.000 - - X3168
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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