DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment aub and alg-4

DIOPT Version :10

Sequence 1:NP_476734.1 Gene:aub / 34524 FlyBaseID:FBgn0000146 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_499191.1 Gene:alg-4 / 176400 WormBaseID:WBGene00006449 Length:1040 Species:Caenorhabditis elegans


Alignment Length:1024 Identity:223/1024 - (21%)
Similarity:391/1024 - (38%) Gaps:276/1024 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NNVEANRGFAPSLGQKSDPSHSEGNQASGGNGGGGDAQVGPSIEKSSLSAVQMHKSEGDPRGSVR 84
            ||...:.|.:.| |..|.|..|  ..|||        |..|.....|||..|....:|....::.
 Worm    12 NNTLTSSGISGS-GSMSPPITS--RPASG--------QASPLTSNGSLSPPQYADDQGSVSYNLD 65

  Fly    85 GRRLITDLVYSR-----------PPGMTSKKGVVGTHITVQANYFKV-LKRPNWTIYQYRVDFTP 137
            ..|.::.|:.|.           .||:    |.:|..|.|::|:|.: ||.|...:.||.|    
 Worm    66 SPRDLSPLLLSELACLNMREVVARPGL----GTIGRQIPVKSNFFAMDLKNPKMVVIQYHV---- 122

  Fly   138 DVEATRLRRSFLYEHKGILGGYIFDGTNMFCINQFKAVQDSPYVLELVTK--------------- 187
            ::.....|:....|.:.|....:.|..|:| .|:|....|..:.|..|.:               
 Worm   123 EIHHPGCRKLDKDEMRIIFWKAVSDHPNIF-HNKFALAYDGAHQLYTVARLEFPDDQGSVRLDCE 186

  Fly   188 ------SRAGENIEIKIKAVGSV----QSTDAEQ--------FQVLNLILRRAMEGLDLKLVSRY 234
                  :|......|.|:.||.|    |.|....        .|:|::|.|:::....||..:.:
 Worm   187 ASLPKDNRDRTRCAISIQNVGPVLLEMQRTRTNNLDERVLTPIQILDIICRQSLTCPLLKNSANF 251

  Fly   235 Y------YD-PQA---KINLENFRMQLWPGYQTSIRQHEN-DILLCSEICH------KVMRTETL 282
            |      |. |.|   .::||..: ::|.|:.:|.....| ..||..::.|      ::...:.:
 Worm   252 YTWKSSCYRIPTAAGQALDLEGGK-EMWTGFFSSAHIASNYRPLLNIDVAHTAFYKTRITVLQFM 315

  Fly   283 YNILSDA---------------------------------------------IRDS--------- 293
            .::|::.                                             :||.         
 Worm   316 CDVLNERTSKPNRNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGPPGANVRDDFGGNGLTFT 380

  Fly   294 ------DDYQSTFKR-----AVMGMVILTDYNNKTYRIDDVDFQSTPLCK--FKTNDGE-----I 340
                  |...|:|:.     |:.||.|...:.....|:..|:....|..|  |:..|.|     .
 Worm   381 MDTLSRDTQLSSFETRIFGDAIRGMKIRAAHRPNAIRVYKVNSLQLPADKLMFQGIDEEGRQVVC 445

  Fly   341 SYVDYYKKRYNIIIRDLKQPLVMSRPTDKNIRGGNDQAIMIIPE-------------LARATGMT 392
            |..||:.::|. .::..|.|.:...|..:||....:..::..|:             :.:|..:.
 Worm   446 SVADYFSEKYG-PLKYPKLPCLHVGPPTRNIFLPMEHCLIDSPQKYNKKMSEKQTSAIIKAAAVD 509

  Fly   393 DAMRADFRTLRAMSEHTRLNPDRRIERLRMFNKRLKSCKQSVET---LKSWNIELDSALVEIPAR 454
            ...|.|                 ||::|        :.:.|..|   ||.:.:.:.|.:::..||
 Worm   510 ATQRED-----------------RIKQL--------AAQASFGTDPFLKEFGVAVSSQMIQTTAR 549

  Fly   455 VLPPEKILFG------NQKIFVCDARADWTNEFRTCSMFKNVHINRWYVITPSRNLRETQEFVQM 513
            |:.|..|:||      |..:|..|  ..||.:.:|..|...........:...|:....|.|.|.
 Worm   550 VIQPPPIMFGGNNRSVNPVVFPKD--GSWTMDNQTLYMPATCRSYSMIALVDPRDQTSLQTFCQS 612

  Fly   514 CIRTASSMKMN----------------ICNPIYEEIPDDRNGTYSQAIDNAAANDPQIVMVVMRS 562
            ....|::|.||                :|. ::.||.|:      ..:.|...:   .::||::|
 Worm   613 LTMKATAMGMNFPRWPDLVKYGRSKEDVCT-LFTEIADE------YRVTNTVCD---CIIVVLQS 667

  Fly   563 PNEEKYSCIKKRTCVDRPVPSQVVTLKVIAPRQQKPTGLMSIATKVVIQMNAKLMGAPWQVV--- 624
            .|.:.|..:|:::.:...:.||.|.:|.::    :||  .:....:|:::|.|:.|...::|   
 Worm   668 KNSDIYMTVKEQSDIVHGIMSQCVLMKNVS----RPT--PATCANIVLKLNMKMGGINSRIVADK 726

  Fly   625 -----IPLHGLMTVGFDVCHSPKNKNK----SYGAFVATMD-QKESFRYFSTVNEHIKGQELSEQ 679
                 :.....|.||.||.|..:.:.:    |..|.||.:| ..:|:      ..::|.|:...:
 Worm   727 ITNKYLVDQPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSY------GANVKVQKKCRE 785

  Fly   680 MSVNMACALR----SYQEQHRSLPERILFFRDGVGDGQLYQVVNSEVNTLKDRLDEIYKSAGKQE 740
            ..|.:..|:|    ::....:..|.||:.:||||.:||..:|:..|:.:::.....|      .|
 Worm   786 SVVYLLDAIRERIITFYRHTKQKPARIIVYRDGVSEGQFSEVLREEIQSIRTACLAI------AE 844

  Fly   741 GCR--MTFIIVSKRINSRYFTGHRNPV--------PGTVVDDVITLPERYDFFLVSQAVRIGTVS 795
            ..|  :|:|:|.||.::|.|..::|.:        |||.||..|..||.:||:|.|.....||..
 Worm   845 DFRPPITYIVVQKRHHARIFCKYQNDMVGKAKNVPPGTTVDTGIVSPEGFDFYLCSHYGVQGTSR 909

  Fly   796 PTSYNVISDNMGLNADKLQMLSYKMTHMYYNYSGTIRVPAVCHYAHKLA 844
            |..|:|:.|.....||::|.::|.|.|.|...:.::.:|...:||..:|
 Worm   910 PARYHVLLDECKFTADEIQSITYGMCHTYGRCTRSVSIPTPVYYADLVA 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aubNP_476734.1 PAZ_piwi_like 272..392 CDD:239211 29/210 (14%)
Piwi_piwi-like_Euk 400..849 CDD:240016 120/497 (24%)
alg-4NP_499191.1 ArgoN 154..235 CDD:465134 15/80 (19%)
ArgoL1 262..306 CDD:462567 11/44 (25%)
PAZ_argonaute_like 374..484 CDD:239212 23/110 (21%)
Piwi_ago-like 530..964 CDD:240015 115/459 (25%)

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