DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAR and SCAR2

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_181378.2 Gene:SCAR2 / 818425 AraportID:AT2G38440 Length:1399 Species:Arabidopsis thaliana


Alignment Length:722 Identity:147/722 - (20%)
Similarity:242/722 - (33%) Gaps:205/722 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VYQQDELQSVE--LETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIGDRANSLQARIDRLA 79
            :||..:....|  ||.|....|..|:|||..|::.|.::|.:|..:|.....|::.|.||:.:|.
plant    19 LYQAADKDDPEALLEGVAMAGLVGILRQLGDLAEFAAEMFHDLHEEVMATASRSHGLMARVQQLE 83

  Fly    80 IKVTQLDSTVEEVPLTDITRKKAFKSAKV-------FDQQIFSRATMPAPMMDTYAQCDKPPPLD 137
            .:.    .::|:..|........|.:..|       .:|.:.:...:|..:||:|.:|..||.|.
plant    84 AEF----PSIEKALLCQTDHSPFFSNKGVEWHPNLQLEQSVVTSGDLPRCVMDSYEECRGPPRLF 144

  Fly   138 KLNVYRDDGKDG-LKFYTDPNY-------FFELWRQEMLKDTERVMHDKGKKLNRPR---QDGGA 191
            .|:.:...|... ||.||||::       :.|.|     .|.:|  ..|.:|..|..   ::||.
plant   145 LLDKFDISGAGACLKRYTDPSFVRLETSSYEESW-----DDIQR--EKKSQKAKRRASQWRNGGT 202

  Fly   192 GGAAGRGNKKQKTKIRVPHNTREQQRQRALV---------------HGETLMPNNVIYRTPNSMV 241
            ...|...:.|........|..........:|               .||:.|...|..|..:.:.
plant   203 PENALSSHAKLHELFLEEHLEAHHSDPARVVKLKTRKLDGCSLISKSGESYMEKFVQTRVDSKIS 267

  Fly   242 NEEAGYGIQLVKIQTVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNV---TKQ 303
            .|        :..|..|     |....:|:...||.:|.::..|...:. ||..:.:.|   ::|
plant   268 YE--------IITQNPG-----LLTWNMDSARDVVTDIPEISMVGAMDK-SHGGSRAEVSFPSEQ 318

  Fly   304 TAVAIADMGVYDTRPPRPNSIELNRSY---QSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQM 365
            ..||               ::.:|..:   ..|.:..|||.::......|.:.|..||..|..| 
plant   319 ENVA---------------NVNMNGGFIEKDIETVPESTYNEVRGTTITQDSQTVLNGKPGFFQ- 367

  Fly   366 HMQHQQMYDAGMYQSHALYGQTGQGVMSPEPIYGPGTPSRNKPRPS------------------- 411
                |:.|      |..|..:....|.:|..:... |.:.::.||.                   
plant   368 ----QRSY------SEDLTSEADNYVDAPATMESE-TETDDECRPKSRSDTLKDGNHHIYSDAVE 421

  Fly   412 ---QPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMA 473
               :.||....:.|.|.||.:.|..:....:|.|.|         ..|..|  ..::..:.|.  
plant   422 ERMEDPPQFSFSHSNGNTPVSENGRSSFGKKSTSYS---------YSDTAS--ISIDDQSDGE-- 473

  Fly   474 AKLLGRANSSSGAGS----------PNSVQNANDMVMTQLSNTFHSIGMTGNQLNSLSDLPPPPP 528
             ||.|...|:|...|          |.:.:.::|:.:.:..::.:..|.|....|.....|.|..
plant   474 -KLSGCLPSTSSFKSELVDSMSHVTPEANKVSHDLNVQESVSSSNVDGQTSLSSNGTCSSPRPVS 537

  Fly   529 VPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANGEMQQPGQQNGVPHIV 593
            ..||..                                  .:..:|||:..::..      |.:|
plant   538 QNDQSC----------------------------------SLTVQSLASEVVETS------PELV 562

  Fly   594 APKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSD 658
                        |.||||...||   |||:..:..:        ..||..|:...:   .||.|.
plant   563 ------------RLDLMKGGNDG---RKVDPFDSSK--------SCASFDAKNSDL---PSETSS 601

  Fly   659 SEDDSEG 665
            ....|||
plant   602 ISSTSEG 608



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000853
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106458
Panther 1 1.100 - - LDO PTHR12902
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.000

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