DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCAR and wasf3

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001072263.1 Gene:wasf3 / 779716 XenbaseID:XB-GENE-1013965 Length:502 Species:Xenopus tropicalis


Alignment Length:683 Identity:226/683 - (33%)
Similarity:305/683 - (44%) Gaps:196/683 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIG 65
            |||.||:|||.|:.|... .|.:.| |||.|||:||..||||||||||||||:||||..:..|..
 Frog     1 MPLVKRNIEPRHLCRGTL-PDGITS-ELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEANNFY 63

  Fly    66 DRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRKKAFKSAKVFDQQIFSRATMPAPMMDTYAQC 130
            .||||||.||||||:||||||||||||.|.||..:|||||:...|||:.|:.::|.|::|.|..|
 Frog    64 IRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMRKAFKSSTTQDQQVVSKNSIPKPVIDIYRTC 128

  Fly   131 DKPPPLDKLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAA 195
            |:|||||.|:.||||.||.|||||||:|||:||:::||:|||....:|.::..:.|.|       
 Frog   129 DRPPPLDILSAYRDDKKDSLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQKEQKRVD------- 186

  Fly   196 GRGNKKQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQLVKIQTVGEA 260
              |..::..|:|...|.|  |....:.:.:.|.|:|.:  :||..                    
 Frog   187 --GTTREVKKVRKARNRR--QEWNIMAYDKELRPDNRL--SPNVF-------------------- 225

  Fly   261 DIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAIADMGVYDTRPPRPN-SI 324
                         ||.                  .:..:::..|...|:|:..| :.|..|| ||
 Frog   226 -------------QVA------------------SSEGSLSPDTRSHISDITEY-SYPATPNHSI 258

  Fly   325 ELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQTGQ 389
            .             .:...|..||:.          .||. |:...|..|.. |:|.:  |....
 Frog   259 H-------------HHPMTPTYMGSV----------DPQH-HIGTSQTNDHD-YRSAS--GTLRH 296

  Fly   390 GVMSPEPIYGPGTPSRNKPRPSQPPPAPPSNGSGGGTPTASNANTPTRGRSMSTSRDALPP---- 450
            |.:|               ||.||||.||:...|.......:||        .:.|..|||    
 Frog   297 GTLS---------------RPQQPPPPPPAGVDGTSPVPIVSAN--------GSLRRVLPPQMME 338

  Fly   451 ------PPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHS 509
                  |||.|.||.                               |.|.|      .:|...||
 Frog   339 YYPTGSPPPPPPVIP-------------------------------SAQTA------FVSPLQHS 366

  Fly   510 I-GMTGNQLNSLSDLPPPPP---VPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQI 570
            : .....|::..:..|.|||   :....||      ..|||||.||...:.:.|...|..|   :
 Frog   367 LPSSPAAQMSGSTYAPSPPPGGIINLLASP------GPPPPPPGPPAFAQSLASSPMHFAR---V 422

  Fly   571 LPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAA 635
            |.....:|                 .::|....|.|:||:.|||.||.|:||::..::|.:|...
 Frog   423 LEAKRLDG-----------------AQLLGLTSDARSDLLSAIRMGIQLKKVQEQREQEAKREPV 470

  Fly   636 PLDVASILARRVAIELSESEDSDSEDDSEGWME 668
            ..|||:||:||:|:|.|:||| :||.|...|.:
 Frog   471 GNDVATILSRRIAVEYSDSED-ESEFDENDWSD 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARNP_001260368.1 None
wasf3NP_001072263.1 WH2_WAVE-3 437..502 CDD:409216 31/65 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 229 1.000 Domainoid score I2420
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 266 1.000 Inparanoid score I2970
OMA 1 1.010 - - QHG54445
OrthoDB 1 1.010 - - D1183697at2759
OrthoFinder 1 1.000 - - FOG0000853
OrthoInspector 1 1.000 - - otm72278
Panther 1 1.100 - - LDO PTHR12902
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4420
SonicParanoid 1 1.000 - - X835
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.110

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