DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAR and Wasf3

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_038945859.1 Gene:Wasf3 / 682937 RGDID:1592807 Length:502 Species:Rattus norvegicus


Alignment Length:679 Identity:224/679 - (32%)
Similarity:296/679 - (43%) Gaps:188/679 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIG 65
            |||.||:|||.|:.|...  .|..:.|||.|||:||..||||||||||||||:||||..:..|..
  Rat     1 MPLVKRNIEPRHLCRGAL--PEGITSELECVTNSTLAAIIRQLSSLSKHAEDIFGELFNEANNFY 63

  Fly    66 DRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRKKAFKSAKVFDQQIFSRATMPAPMMDTYAQC 130
            .||||||.||||||:||||||||||||.|.||..||||||:.:.|||:.|:.::|.|:.|.|.|.
  Rat    64 IRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTIQDQQVVSKNSIPNPVADIYNQS 128

  Fly   131 DKPPPLDKLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAA 195
            ||||||..|..||||.||||||||||:|||:||:::||:|||....:|.::..:.|.|       
  Rat   129 DKPPPLSILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDKRKEKRRQKEQKRVD------- 186

  Fly   196 GRGNKKQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQLVKIQTVGEA 260
              |..::..|:|...|.|::....|  :.:.|.|:|.:.::.:...:.|             |..
  Rat   187 --GTTREVKKVRKARNRRQEWNMMA--YDKELRPDNRLSQSVHHGASSE-------------GSL 234

  Fly   261 DIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAIADMGVYDTRPPRPNSIE 325
            ..|.|..|.|              |..|:                        |...|       
  Rat   235 SPDTRSHTSD--------------VTDYS------------------------YPATP------- 254

  Fly   326 LNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQTGQG 390
             |.:.|.:.:..|                                  |.||....||   .|.||
  Rat   255 -NHALQVQPVTPS----------------------------------YTAGDAPLHA---ATNQG 281

  Fly   391 VMSPEPIYGPGTPSRNK---PRPSQPPPAPPSNGSGGGTPTASNANTPTR--------GRSMSTS 444
            .   |..|.|.:.|...   .||.||||.||..     .|..|.|:|...        .:.:...
  Rat   282 A---EHEYRPSSASARHMALNRPQQPPPPPPPQ-----APDGSQASTSVAPADYGMLPAQIIEYY 338

  Fly   445 RDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFHS 509
            ..:.|||||.|.:|                     .::.:...||..:............:|:  
  Rat   339 NPSGPPPPPPPPMI---------------------PSAQTAFVSPLQIPAQQPSFPASTGSTY-- 380

  Fly   510 IGMTGNQLNSLSDLPPPPPVPDQHSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKS 574
                          |.||..|.......:||...||||||.||.                  |.|
  Rat   381 --------------PTPPHQPSTGLLATAPPPPGPPPPPPGPPG------------------PSS 413

  Fly   575 LANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDV 639
            |::..|..|    .|.....|:...||..|.|:||:.|||.||.|:||::..::|.:|.....||
  Rat   414 LSSSPMHGP----PVAEAKRPEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGNDV 474

  Fly   640 ASILARRVAIELSESEDSDSEDDSEGWME 668
            |:||:||:|:|.|:|:| |||.|...|.:
  Rat   475 ATILSRRIAVEYSDSDD-DSEFDENDWSD 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARNP_001260368.1 None
Wasf3XP_038945859.1 WH2 437..502 CDD:425359 31/65 (48%)
actin-binding sequence 454..457 CDD:409196 1/2 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 288 1.000 Inparanoid score I2736
OMA 1 1.010 - - QHG54445
OrthoDB 1 1.010 - - D1183697at2759
OrthoFinder 1 1.000 - - FOG0000853
OrthoInspector 1 1.000 - - otm46149
orthoMCL 1 0.900 - - OOG6_106458
Panther 1 1.100 - - LDO PTHR12902
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X835
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.980

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