DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAR and wasf3a

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:XP_009300273.1 Gene:wasf3a / 562750 ZFINID:ZDB-GENE-060531-55 Length:481 Species:Danio rerio


Alignment Length:688 Identity:219/688 - (31%)
Similarity:294/688 - (42%) Gaps:227/688 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIG 65
            |||.||:|||.|::|...  .|..|.|||.|||.||:.|||||||||||||||||||..:.....
Zfish     1 MPLVKRNIEPKHLSRGAL--PESISNELECVTNNTLSAIIRQLSSLSKHAEDVFGELFNEANTFY 63

  Fly    66 DRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRKKAFKSAKVFDQQIFSRATMPAPMMDTYAQC 130
            .||||||.||||||:|||||||:||||.|.||..:|||||:.|.|||:.:::::|.|:.:.|...
Zfish    64 LRANSLQDRIDRLAVKVTQLDSSVEEVSLQDINMRKAFKSSTVQDQQVVTKSSVPNPITEMYNTS 128

  Fly   131 DKPPPLDKLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQ-----DGG 190
            ||||||:.|:.||||..||:||||||:|||:||:::||:|||    ||.|:..:.|:     ||.
Zfish   129 DKPPPLNILSAYRDDHIDGIKFYTDPSYFFDLWKEKMLQDTE----DKRKEKRKHREQKRCVDGT 189

  Fly   191 AGGAAGRGNKKQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQLVKIQ 255
            .        .::..|:|..||.|::....|.                                  
Zfish   190 L--------PREVKKVRKAHNRRQEWNMMAF---------------------------------- 212

  Fly   256 TVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAIADMGVYDTRPPR 320
                 |.:||     ..|:                  ||.:|.:                  |..
Zfish   213 -----DKELR-----PEHR------------------HLHHNHH------------------PHH 231

  Fly   321 PNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYG 385
            |    |:|...||   ||    |.|:..:::..       .||.....|.:|:   |....|..|
Zfish   232 P----LHRGASSE---GS----LSPEGSSEFPV-------HPQAGAHTHPRMF---MSVDSASSG 275

  Fly   386 QTGQGVMSPEPIYGPG-------TPSRNKPRPSQPPPAPPSNGSGGGTPTASNANTPTRGRSMST 443
            ..|........|.|||       ..|..:..|:.|....|.||..|      |...|....||..
Zfish   276 VNGAVEHEYHSIGGPGAADGAFRVASLARAHPNPPQYTHPENGVNG------NITLPPTDYSMME 334

  Fly   444 SRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFH 508
            ...:..||||.|..::|:.                 .::.:...||.:..:|             
Zfish   335 YYASSGPPPPPPPPMAPLI-----------------PSAQTAFASPPATPHA------------- 369

  Fly   509 SIGMTGNQLNSLSDLPPPPPVPDQHSPKMSPP--NAAPPPPPPPPPVEEG------MGSGNQHTL 565
              |...:.|..     |.||||    |.:|.|  ..||||.||.||..||      .|:|     
Zfish   370 --GPVSSALRY-----PLPPVP----PALSSPTEGPAPPPAPPVPPHPEGRRLNLQAGAG----- 418

  Fly   566 RPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEI 630
                                                   .|:||:.|||.||.|:||::.::::.
Zfish   419 ---------------------------------------ARSDLLSAIRMGIQLKKVQEQQEQQA 444

  Fly   631 ERNAAPLDVASILARRVAIELSESEDSDSEDDSEGWME 668
            :|.....|||:||:||:|:|.|:||| |||.|...|.:
Zfish   445 KREPVGNDVATILSRRIAVEYSDSED-DSELDDNEWSD 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARNP_001260368.1 None
wasf3aXP_009300273.1 WH2 416..>436 CDD:308040 11/63 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 254 1.000 Domainoid score I2019
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 304 1.000 Inparanoid score I2631
OMA 1 1.010 - - QHG54445
OrthoDB 1 1.010 - - D1183697at2759
OrthoFinder 1 1.000 - - FOG0000853
OrthoInspector 1 1.000 - - otm24952
orthoMCL 1 0.900 - - OOG6_106458
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4420
SonicParanoid 1 1.000 - - X835
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.910

Return to query results.
Submit another query.