DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCAR and gukh

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_732393.1 Gene:gukh / 53563 FlyBaseID:FBgn0026239 Length:1788 Species:Drosophila melanogaster


Alignment Length:759 Identity:161/759 - (21%)
Similarity:264/759 - (34%) Gaps:208/759 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEE 91
            |.::::|.||:|.:|||:||...|.|:|.:|.||:..:|:||..:|.:|..:..:|...|.....
  Fly   138 EFDSISNITLSNALRQLASLVLIASDIFDDLQRDLQAVGERAGRVQRKIAAVERRVCAYDPKTVT 202

  Fly    92 VPLTDI----TRKKAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPL---------------D 137
            ||.:|:    .||..|::.|.|.|::|:..|.|..:...|.:..|..|:               .
  Fly   203 VPESDLLTFAQRKHHFETDKSFQQELFTGETRPLSVRQLYTEAGKELPVATGATATALASLAHSQ 267

  Fly   138 KLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAA------- 195
            .|...|....:|                |:|.....|:     :||         |:.       
  Fly   268 SLIPSRSISFNG----------------EVLSSDHEVL-----QLN---------GSTDTEDHLL 302

  Fly   196 -----GRGNKKQKTK------IRVP---HNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAG 246
                 |..|:|.:|:      ||:|   .:.|:.....||  |:..:       ||:.|.:.:..
  Fly   303 CVSDFGNANRKLRTRIDAEIEIRLPAAIEDLRKWTSSEAL--GDVTV-------TPDCMHHVDTS 358

  Fly   247 YGIQLVKIQTVGEADI---DLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAI 308
            ....|    .:||..|   .|..|.|.|        ..||.:...| ||...::|.....|...|
  Fly   359 VSTSL----AIGENGILTPALSPSVLSA--------DAVDALYAQN-LSQAADSSRHNHHTQALI 410

  Fly   309 -----ADMGVYDTRP-PRPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHM 367
                 .|:.:....| |...:.::...|.:|.|..:|..:...:|.....:|.|...||......
  Fly   411 PNDINKDVPLNHRLPSPEEQTKQIALKYPAEVISVNTSGKHFQRMCAARKSTSGGYAGGATAGSS 475

  Fly   368 QHQQMYDAGMYQSHALYG--QTGQGVMSPEPIYGPGTPSRNKPRPS-----QPPPAPPSNGSGGG 425
            ......:||..:.:.|..  ||.........:       |.|.|.:     |......:||: |.
  Fly   476 SSTSPENAGQTEGNNLDDNVQTVSRRSRSRKV-------RGKRRNTIAGIDQKEIQDAANGN-GE 532

  Fly   426 TPTASNANTPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSS-----SG 485
            :..||||.:|                      ::|.......:|....:|..||:.||     ..
  Fly   533 SKNASNATSP----------------------VAPAQQAETTSSDAKKSKKFGRSKSSDILKKES 575

  Fly   486 AGSPNSVQNANDMVMTQLS-------NTF---HSIGMTGNQLNS--LSDLPPPPPVPDQH--SP- 535
            |..|   .:.....:|:|:       |.|   |..|..|:||::  .|.........|.|  || 
  Fly   576 AALP---YDKGKSTLTRLNSLKQWGRNRFKFMHRTGELGDQLDTSGCSSQNSSAEKADSHHGSPA 637

  Fly   536 -------------------KMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQIL---PKSLANG 578
                               :.|....:....|.....|:.:...:...||....|   |.:.|:.
  Fly   638 GDNSKRDIDDECVVHHLVAQKSESRFSHERKPSYSSSEKSISVSSSGQLRGRLQLSSGPMAAAHV 702

  Fly   579 EMQQPG-----QQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLD 638
            :|::..     ::||: |.:|.|:..|  |....:...:...|......|.:.|.:...::..|:
  Fly   703 KMRETATLNRQRRNGL-HALAGKEEQP--HSSSGNWSASSESGRASIGSEITMQPKSSASSTSLN 764

  Fly   639 V-------------ASILARRVAIELSESEDSDSEDDSEGWMEP 669
            |             :|:|:||..:..|.|    |...|||...|
  Fly   765 VSSFQPGGAGSGPPSSMLSRRRFLNTSAS----SSVTSEGTATP 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARNP_001260368.1 None
gukhNP_732393.1 NHS <818..>846 CDD:291922
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12902
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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