DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCAR and RGD1561552

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001119743.1 Gene:RGD1561552 / 302367 RGDID:1561552 Length:634 Species:Rattus norvegicus


Alignment Length:782 Identity:150/782 - (19%)
Similarity:249/782 - (31%) Gaps:281/782 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 YQQDELQSV------------ELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGNIGDRANS 70
            :.:|.|:::            |...:..|:|:.|:||::.|.|..|||.|:|.:::.::..:...
  Rat     3 FNEDILRNILKEHGTINEIKNEFIYIILTSLSKIVRQVNDLDKFTEDVLGKLDKEIHDLSFKLKI 67

  Fly    71 LQARIDRLAIKVTQLDSTVEEVPLTDITRKKAFKSAKVFD------QQIFSRATMPAPMMDTYAQ 129
            ||..|       .||.:.:.::| .||...:.:||.|.|.      ||::|..::|..:.:....
  Rat    68 LQENI-------IQLTNAIHKIP-NDILSMQLWKSRKTFSKITIETQQVYSCTSLPIKIFERNNA 124

  Fly   130 CDKPPPLDKLNVYRDDGKDGLKFYTDPNYFFE--LWRQEMLKDTERVMHDKGKKLNRPRQDGGAG 192
            ..:.|.|.....|::|.:|.    ...|..|.  |:..::|||...|                  
  Rat   125 NIRIPLLTVPEYYQNDMEDS----PSSNGLFHPCLYCSKLLKDNVSV------------------ 167

  Fly   193 GAAGRGNKKQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQLVKIQTV 257
                  ||:..::       ::..:.:.|.|                     ||           
  Rat   168 ------NKQLASE-------KKHTQNQNLTH---------------------AG----------- 187

  Fly   258 GEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAIADMGVYDTRPPRPN 322
                 |.:            |:.....:|.:..:.|:                        |...
  Rat   188 -----DFK------------NVLQCHLLKKHIPVDHI------------------------PASG 211

  Fly   323 SIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHALYGQT 387
            | |::.||..:...||::...||........:..|.:  |.:....|..:......:...||| |
  Rat   212 S-EVSHSYLDQYGGGSSFYIFPPNRNKHQGTSAANIL--PSEQEQLHYHIGCMSNSRPRVLYG-T 272

  Fly   388 GQG-------------------------------------VMSPEP-----IYGPGTPS-----R 405
            |:|                                     :.|.:|     |...||.|     :
  Rat   273 GKGDVVVKQRRVLTHYKSNVFVNPLAPKAPPLPSDWLIHLISSKKPSASGVISSRGTSSFFVLGK 337

  Fly   406 NKPRPSQ------------PPPAPPSNGS----------GGGTPTASNAN---------TPTRGR 439
            .|..||.            ||....:..|          ||.:|...:..         .|.|.:
  Rat   338 TKTLPSACLKSNPNIDLTVPPEVEVTATSESLERYELKPGGLSPQDMDQKIPLLLYPSVIPLRNQ 402

  Fly   440 ---SMSTSRDAL-PPPPPVPDVI--SPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDM 498
               |:.|..|:| ..|.|:....  ||.|              |.::..:.|:...:.|.|.:..
  Rat   403 SWDSVVTLIDSLVEKPQPIKSSFPKSPRS--------------LSKSKYAHGSLPQHPVANTSRT 453

  Fly   499 VMTQLSNTF----HSIGMTGNQLNSLSDLPPPPP------VPDQ---HSPKMSPPNAAPPPPPPP 550
            ...||..::    ||.        |:|..|.|.|      ||.:   |..|:....:..|...|.
  Rat   454 FSAQLPKSYRVPRHSF--------SVSASPSPKPQTSSNVVPKRSVSHLTKLIEAQSRSPVTYPK 510

  Fly   551 ----PPVEEGMGSGNQHTLRPHQILPKSLANGEMQQPGQ----------QNGVPHIVAPKKMLPP 601
                ||..:.....|:..|.....|..||::.:......          ::....|:....:||.
  Rat   511 RHLHPPQAKPSKQLNKSNLTKVSTLQSSLSSMKSSASNHRALAKRHYRIESAYASILQNTSILPI 575

  Fly   602 FHDPRNDLMKAIRDGITLRKVEKSEQKEIERNAAPLDVASILARRVAIELSESEDSDSEDDSEGW 666
            ....|..||:|||.||.|||.....:.:...|.|.:    |..||.|:.. .|..||||.:   |
  Rat   576 MTKARKALMEAIRKGIKLRKTRPRAESDDPENEAKM----IRFRRKAMGY-HSGKSDSETE---W 632

  Fly   667 ME 668
            :|
  Rat   633 VE 634



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353960
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1830
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12902
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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