DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAR and wasf2

DIOPT Version :9

Sequence 1:NP_001260368.1 Gene:SCAR / 34519 FlyBaseID:FBgn0041781 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001096496.1 Gene:wasf2 / 100125121 XenbaseID:XB-GENE-5953840 Length:478 Species:Xenopus tropicalis


Alignment Length:688 Identity:217/688 - (31%)
Similarity:293/688 - (42%) Gaps:230/688 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPLPKRSIEPVHVARSVYQQDELQSV--ELETVTNTTLTNIIRQLSSLSKHAEDVFGELARDVGN 63
            |||..|.|||..:.|     .:|..|  |||.:||.||:|:||||.|||::|||:||||..:...
 Frog     1 MPLVARCIEPRFLCR-----QKLPPVRSELECMTNLTLSNVIRQLGSLSRYAEDIFGELFSEASM 60

  Fly    64 IGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRKKAFKSAKVFDQQIFSRATMPAPMMDTYA 128
            ...|..||..|::||.:||||||...|||.|..|..:|||:|....|||:|.|.::..|:.:||:
 Frog    61 FAHRVGSLGERVERLQVKVTQLDPKEEEVSLQGINTRKAFRSNTSQDQQLFIRDSLSLPVRETYS 125

  Fly   129 QCDKPPPLDKLNVYRDDGKDGLKFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGG 193
            .||.||||:.|:.||:|.|:.|||||||:|||:||:::||:||:.::.:| :|..|.::|.    
 Frog   126 TCDMPPPLNILSPYREDEKEALKFYTDPSYFFDLWKEKMLQDTKDIIKEK-RKHRREKKDN---- 185

  Fly   194 AAGRGNKKQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQLV----KI 254
             ..|||...: |||    ||:::.                         |:...|::.|    |:
 Frog   186 -PNRGNVNPR-KIR----TRKEEW-------------------------EKMKMGLEFVEAKDKM 219

  Fly   255 QTVGEADIDLRHSTLDAHHQVVGNIQDVDTVKPYNMLSHLENNSNVTKQTAVAIADMGVYDTRPP 319
            |..|.                          :||       .|.:|   :.:...||..|...||
 Frog   220 QNAGP--------------------------QPY-------QNGSV---STIESLDMNQYPPPPP 248

  Fly   320 --RPNSIELNRSYQSEQIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHA 382
              .|:||      ....||.|    |||...:         :.|...:|.               
 Frog   249 FEEPSSI------SQPFIDDS----LPPPPAD---------VSGQPSLHR--------------- 279

  Fly   383 LYGQTGQGVMSPEPIYGPGTPSRNKP---RPS-QPPPAPPSNGSGGGTPTASNANTPTRGRSMST 443
                  ..::|  |.|.|..|....|   ||| .||||||.....|..|.|              
 Frog   280 ------SSLVS--PAYPPPAPPIGSPIGSRPSFSPPPAPPPPPPDGSVPDA-------------- 322

  Fly   444 SRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSSSGAGSPNSVQNANDMVMTQLSNTFH 508
              ..||||.| |.|...:.|.                    .|.:|                   
 Frog   323 --PYLPPPSP-PPVFPSLPGF--------------------PAPAP------------------- 345

  Fly   509 SIGMTGNQLNSLSDLPPPPPVP--------DQHSPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTL 565
                           |||||.|        ..|||..:|....|||||||||             
 Frog   346 ---------------PPPPPAPTHLDYPAASPHSPTQAPSGGPPPPPPPPPP------------- 382

  Fly   566 RPHQILPKSLANGEMQQPGQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEI 630
            .|....|.:.::.|.:.|.|      |..||..|||..|||:||:.|||:|..|||||:..:.| 
 Frog   383 PPGPPPPPAFSHSEGESPSQ------ISKPKTSLPPVSDPRSDLLSAIREGFQLRKVEEKMEHE- 440

  Fly   631 ERNAAPLDVASILARRVAIELSESEDSDSEDDSEGWME 668
            :|:....|||:||:||:|:|.|:|||..||.|.:.|.:
 Frog   441 KRDVGGNDVATILSRRIAVEYSDSEDDSSEFDEDDWSD 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCARNP_001260368.1 None
wasf2NP_001096496.1 WH2 408..>461 CDD:425359 27/53 (51%)
actin-binding sequence 430..433 CDD:409196 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1183697at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.