DRSC/TRiP Functional Genomics Resources

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Protein Alignment YL-1 and SWC2

DIOPT Version :9

Sequence 1:NP_001285823.1 Gene:YL-1 / 34516 FlyBaseID:FBgn0032321 Length:351 Species:Drosophila melanogaster
Sequence 2:NP_181212.2 Gene:SWC2 / 818246 AraportID:AT2G36740 Length:365 Species:Arabidopsis thaliana


Alignment Length:374 Identity:114/374 - (30%)
Similarity:164/374 - (43%) Gaps:73/374 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSD 69
            |:.|...|.::..||::|.|:|....:....:|:|.|.|||.:.|..|..||||:   :|||..|
plant    14 RTTRATRGKRMTKLLDDEVEEDEQFWNQEALKEEEHDDEYEAEREVADEFDSDFN---DDEPEPD 75

  Fly    70 QEEAPEKK-----RKRGVVNTKAYKETKPAVKKETKATPALH----KKRPG---GGVTKRRPRPR 122
            .....||:     :||.:...|...:.|   ||:||....|.    .::||   |...:......
plant    76 AVAVNEKELRDLPKKRLIYPGKTASKKK---KKKTKVVSQLEYIPGDEKPGEELGNKEQEEKEEN 137

  Fly   123 FTVLDSG-----RKSIRTSTAIKTQATKIRLKELDDARKR--KKKKVRVEDYMPTQEELLEEAKI 180
            ....|..     |||.|||..:: ||.:..|:....|..:  ::|||..|..| ||||:|.||..
plant   138 EAQEDMEGEKVIRKSTRTSVVVR-QAERDALRAAIQATTKPIQRKKVGEEKRM-TQEEMLLEAAQ 200

  Fly   181 TEEENTKSLEKFQKMELE-KKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKC 244
            ||..|.::||:....|.| |||:...|..:.||.||||                   |||.....
plant   201 TEIMNLRNLERVLAREEEVKKKAIVHKAVYKGPQIRYH-------------------SKDGCNYL 246

  Fly   245 ERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYY 309
            |..        |...|.|....|:.|.....:|.||.|||:|.||.|..||.:..|||.:||.: 
plant   247 EFC--------NGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIRERF- 302

  Fly   310 MQLEQQGGGSEQPEL--------AKWLEWR----KLVKENR---LKASA 343
              :::..|..::.|:        ||....:    |:.|.|:   |::||
plant   303 --MDEHDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFSLRSSA 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YL-1NP_001285823.1 YL1 3..218 CDD:283433 77/232 (33%)
LTV <20..>75 CDD:282087 19/54 (35%)
YL1_C 276..304 CDD:198061 15/27 (56%)
SWC2NP_181212.2 YL1 14..239 CDD:399054 78/251 (31%)
YL1_C 270..298 CDD:400524 15/27 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 84 1.000 Domainoid score I2869
eggNOG 1 0.900 - - E1_KOG2897
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 106 1.000 Inparanoid score I2112
OMA 1 1.010 - - QHG59697
OrthoDB 1 1.010 - - D1468037at2759
OrthoFinder 1 1.000 - - FOG0005752
OrthoInspector 1 1.000 - - oto3050
orthoMCL 1 0.900 - - OOG6_104390
Panther 1 1.100 - - LDO PTHR13275
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.840

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