DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and HSE1

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_011861.1 Gene:HSE1 / 856387 SGDID:S000000994 Length:452 Species:Saccharomyces cerevisiae


Alignment Length:510 Identity:135/510 - (26%)
Similarity:222/510 - (43%) Gaps:111/510 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KATSETNTNDNWSLILDVCDKVTTNPR-LAKDCLKAVMRRMGHTDPHVVMQAITLLDALSNNCGK 79
            |||.....:|||..||||||.|..:|. ..::.:..:.:|:...|.:|:::.::|..:|:.|||.
Yeast    14 KATDPKLRSDNWQYILDVCDLVKEDPEDNGQEVMSLIEKRLEQQDANVILRTLSLTVSLAENCGS 78

  Fly    80 PLHLEVASRDFETEFRRLLAKAQPKVSLK--MRQVLKNWAENDYKNDRELDLIPALYAKLRQEGY 142
            .|..|::|::|.:....|:......::||  :..|:|..::: :|:|..|..:..||.|:::   
Yeast    79 RLRQEISSKNFTSLLYALIESHSVHITLKKAVTDVVKQLSDS-FKDDPSLRAMGDLYDKIKR--- 139

  Fly   143 DFKNLGDKTSKTVAEKAAALPKDPNV-----VSSQ---QEEDDIAKAIELSLKENKGSPKTGSVA 199
                           ||..|.: |||     :|:|   .:::::.||:::||.|.:   |...:.
Yeast   140 ---------------KAPYLVQ-PNVPEKHNMSTQADNSDDEELQKALKMSLFEYE---KQKKLQ 185

  Fly   200 STGTASAYPSLYPSFAGTGSSAPSAEASSAPAPE-PRKVRALYDFEAAEENELTFFAGEIIHVLD 263
            .....||  .:.|...........|.|...||.. .|:||||||....|.:||:|..|::|.||:
Yeast   186 EQEKESA--EVLPQQQQQHQQQNQAPAHKIPAQTVVRRVRALYDLTTNEPDELSFRKGDVITVLE 248

  Fly   264 DSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTEAAA 328
            ....:||||..:...|:||.|:||.  .|:|.:.:|.::...          .|....|||    
Yeast   249 QVYRDWWKGALRGNMGIFPLNYVTP--IVEPSKEEIEKEKNK----------EAIVFSQKT---- 297

  Fly   329 AAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQ------LEQEVHQMGPLIDAELERVD 387
                         .||:|.:.|:.|:   .:.:|:|:||      :...|..:.|.:...|.:..
Yeast   298 -------------TIDQLHNSLNAAS---KTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYA 346

  Fly   388 RKHAQLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAGGF 452
            ::...:..|...|.:|...|:.||  ||||..|.:...          ||.|||        .|.
Yeast   347 KEKEDMLSLRQVLANAERSYNQLM--DRAANAHISPPV----------PGPALY--------AGM 391

  Fly   453 PPAQNYPGM-------HSMPYGPVPN-----PPTSAPSQAP--GAPGGY--LGQP 491
            ..|.|.|.|       .|..|.|.|:     .||::.:..|  |...||  :.||
Yeast   392 THANNTPVMPPQRQSYQSNEYSPYPSNLPIQHPTNSANNTPQYGYDLGYSVVSQP 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 37/127 (29%)
SH3_STAM 235..288 CDD:212754 24/52 (46%)
GAT_STAM 337..413 CDD:410593 18/81 (22%)
PHA03247 <436..526 CDD:223021 22/72 (31%)
HSE1NP_011861.1 VHS_HSE1 8..140 CDD:340775 37/144 (26%)
SH3_GRB2_like_C 221..273 CDD:212739 23/51 (45%)
GAT_Hse1 290..374 CDD:410591 24/105 (23%)

Return to query results.
Submit another query.