DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and HSE1

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_011861.1 Gene:HSE1 / 856387 SGDID:S000000994 Length:452 Species:Saccharomyces cerevisiae


Alignment Length:510 Identity:135/510 - (26%)
Similarity:222/510 - (43%) Gaps:111/510 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KATSETNTNDNWSLILDVCDKVTTNPR-LAKDCLKAVMRRMGHTDPHVVMQAITLLDALSNNCGK 79
            |||.....:|||..||||||.|..:|. ..::.:..:.:|:...|.:|:::.::|..:|:.|||.
Yeast    14 KATDPKLRSDNWQYILDVCDLVKEDPEDNGQEVMSLIEKRLEQQDANVILRTLSLTVSLAENCGS 78

  Fly    80 PLHLEVASRDFETEFRRLLAKAQPKVSLK--MRQVLKNWAENDYKNDRELDLIPALYAKLRQEGY 142
            .|..|::|::|.:....|:......::||  :..|:|..::: :|:|..|..:..||.|:::   
Yeast    79 RLRQEISSKNFTSLLYALIESHSVHITLKKAVTDVVKQLSDS-FKDDPSLRAMGDLYDKIKR--- 139

  Fly   143 DFKNLGDKTSKTVAEKAAALPKDPNV-----VSSQ---QEEDDIAKAIELSLKENKGSPKTGSVA 199
                           ||..|.: |||     :|:|   .:::::.||:::||.|.:   |...:.
Yeast   140 ---------------KAPYLVQ-PNVPEKHNMSTQADNSDDEELQKALKMSLFEYE---KQKKLQ 185

  Fly   200 STGTASAYPSLYPSFAGTGSSAPSAEASSAPAPE-PRKVRALYDFEAAEENELTFFAGEIIHVLD 263
            .....||  .:.|...........|.|...||.. .|:||||||....|.:||:|..|::|.||:
Yeast   186 EQEKESA--EVLPQQQQQHQQQNQAPAHKIPAQTVVRRVRALYDLTTNEPDELSFRKGDVITVLE 248

  Fly   264 DSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTEAAA 328
            ....:||||..:...|:||.|:||.  .|:|.:.:|.::...          .|....|||    
Yeast   249 QVYRDWWKGALRGNMGIFPLNYVTP--IVEPSKEEIEKEKNK----------EAIVFSQKT---- 297

  Fly   329 AAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQ------LEQEVHQMGPLIDAELERVD 387
                         .||:|.:.|:.|:   .:.:|:|:||      :...|..:.|.:...|.:..
Yeast   298 -------------TIDQLHNSLNAAS---KTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYA 346

  Fly   388 RKHAQLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAGGF 452
            ::...:..|...|.:|...|:.||  ||||..|.:...          ||.|||        .|.
Yeast   347 KEKEDMLSLRQVLANAERSYNQLM--DRAANAHISPPV----------PGPALY--------AGM 391

  Fly   453 PPAQNYPGM-------HSMPYGPVPN-----PPTSAPSQAP--GAPGGY--LGQP 491
            ..|.|.|.|       .|..|.|.|:     .||::.:..|  |...||  :.||
Yeast   392 THANNTPVMPPQRQSYQSNEYSPYPSNLPIQHPTNSANNTPQYGYDLGYSVVSQP 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 37/140 (26%)
SH3_STAM 235..288 CDD:212754 24/52 (46%)
GAT 340..412 CDD:281166 17/77 (22%)
HSE1NP_011861.1 VHS_HSE1 8..140 CDD:340775 37/144 (26%)
SH3_GRB2_like_C 221..273 CDD:212739 23/51 (45%)
GAT_Hse1 290..374 CDD:410591 24/105 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345386
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2199
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 120 1.000 Inparanoid score I1316
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52024
OrthoFinder 1 1.000 - - FOG0002740
OrthoInspector 1 1.000 - - oto100001
orthoMCL 1 0.900 - - OOG6_103033
Panther 1 1.100 - - LDO PTHR45929
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R571
SonicParanoid 1 1.000 - - X1427
TreeFam 00.000 Not matched by this tool.
1211.830

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