DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and STAM

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_003464.1 Gene:STAM / 8027 HGNCID:11357 Length:540 Species:Homo sapiens


Alignment Length:593 Identity:236/593 - (39%)
Similarity:329/593 - (55%) Gaps:74/593 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGIFGQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHTDPHVVMQ 65
            |.:|. ::|||.||||||||.||.::|.||||:||||..:....||||:::|||:.|.||||.||
Human     1 MPLFA-TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQ 64

  Fly    66 AITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLI 130
            |:|||.|..:||||..||||.||||.:|...:|.|..|||..|::.::..|.: ::|||.:|.||
Human    65 ALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD-EFKNDPQLSLI 128

  Fly   131 PALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKT 195
            .|:...|:::|..|..:|.:.::......|.:.|||..|::::||:|:||||||||||.:....|
Human   129 SAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVANKKEEEDLAKAIELSLKEQRQQSTT 193

  Fly   196 GSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFAGEIIH 260
            .|           :||||   |.|...:.:      .|.|||||:|||||||:|||||.|||||.
Human   194 LS-----------TLYPS---TSSLLTNHQ------HEGRKVRAIYDFEAAEDNELTFKAGEIIT 238

  Fly   261 VLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTE 325
            ||||||||||||...:|.||||||||||||:.:||.  |..:.|:...:...::::   ::.:.|
Human   239 VLDDSDPNWWKGETHQGIGLFPSNFVTADLTAEPEM--IKTEKKTVQFSDDVQVET---IEPEPE 298

  Fly   326 AAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELERVDRKH 390
                     |..|||.|:|:||.:|...:|.|...|..|:|.||...||||||||.:||.:||||
Human   299 ---------PAFIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKH 354

  Fly   391 AQLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAGGFPPA 455
            ::|::|:..:::|::||..||.:|...:.:.......:....:|..|:.:|..|  |.:|.:..|
Human   355 SELSELNVKVMEALSLYTKLMNEDPMYSMYAKLQNQPYYMQSSGVSGSQVYAGP--PPSGAYLVA 417

  Fly   456 QNYPGMHSMPYGPVPNPPTSAPSQAPGAPGGYLGQPQGQVPLPYQNGHAAQMNSLPAHLTQPTGT 520
            .|....|...|. :|....|:.|||       :..|.....||.|...||..|::.:.:  ...|
Human   418 GNAQMSHLQSYS-LPPEQLSSLSQA-------VVPPSANPALPSQQTQAAYPNTMVSSV--QGNT 472

  Fly   521 APMPQPIYTQPTPVTTQQ-------QQQPLPQHPQQP---------PQQQG-QQPPQHPQNSYHI 568
            .|...|:|:.|...|...       .|...|..||.|         ||..| |||||        
Human   473 YPSQAPVYSPPPAATAAAATADVTLYQNAGPNMPQVPNYNLTSSTLPQPGGSQQPPQ-------- 529

  Fly   569 DPQSQYAQ 576
             ||..|:|
Human   530 -PQQPYSQ 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 71/143 (50%)
SH3_STAM 235..288 CDD:212754 43/52 (83%)
GAT 340..412 CDD:281166 33/71 (46%)
STAMNP_003464.1 VHS_STAM 9..142 CDD:239625 69/133 (52%)
SH3_STAM1 213..267 CDD:212897 44/53 (83%)
GAT 306..377 CDD:281166 33/70 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 500..540 16/46 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141240
Domainoid 1 1.000 148 1.000 Domainoid score I4479
eggNOG 1 0.900 - - E1_KOG2199
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 377 1.000 Inparanoid score I2091
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52024
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002740
OrthoInspector 1 1.000 - - otm41810
orthoMCL 1 0.900 - - OOG6_103033
Panther 1 1.100 - - O PTHR45929
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R571
SonicParanoid 1 1.000 - - X1427
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.790

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