DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and Gga2

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_083034.1 Gene:Gga2 / 74105 MGIID:1921355 Length:603 Species:Mus musculus


Alignment Length:733 Identity:136/733 - (18%)
Similarity:225/733 - (30%) Gaps:234/733 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHTDPHVVMQAITL 69
            |.::..:..:.|||..:....:||.|...|::|.|:|.........:..::........:.|:|:
Mouse    24 GAAAALELWLNKATDPSMAEQDWSAIQKFCEQVNTDPSGPTHAPWLLAHKIQSPQEKEALYALTV 88

  Fly    70 LDALSNNCGKPLHLEVASRDFETEFRRLL------AKAQPKVSLKMRQVLKNWA---ENDYKNDR 125
            |:...|:||:..|.|||...|..|..::|      |.|..||..::.::|.:|.   ..|.|   
Mouse    89 LEICMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWFPEDIK--- 150

  Fly   126 ELDLIPALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENK 190
                |...|..|:::|                   .:.:||.:                      
Mouse   151 ----IRDAYQMLKKQG-------------------IIKQDPKL---------------------- 170

  Fly   191 GSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFA 255
                                           |..:....|:|.|:.:     |:|.||....   
Mouse   171 -------------------------------PMDKILPPPSPWPKSI-----FDADEEKSKL--- 196

  Fly   256 GEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAAL 320
              :..:|..:.|          |.|..:|.:..:|        :.::                  
Mouse   197 --LTRLLKSNHP----------EDLQAANRLIKNL--------VKEE------------------ 223

  Fly   321 QQKTEAAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGP---LIDAE 382
            |:|:|..:...:|  ||...|.: |:|.               |||.:.:......|   .:...
Mouse   224 QEKSEKVSRRVSA--VEEVRSHV-RVLR---------------EMLSMYRRPGHALPDQQALQVV 270

  Fly   383 LERVDRKHAQLTQLSSDLVD-----------------AINLYHTLMRDDRAAAGHFAAAAGGFMP 430
            .||.::....|.:|:||..|                 .:.||..:: :.|.:||:...||.|.:|
Mouse   271 YERCEKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVRLYKQVV-EGRVSAGNAVPAAVGAIP 334

  Fly   431 GLAGFPGAALYGAPGYPAAGGFPPAQNYPGMHSMPYGPVPN------PPTSAPSQAPGA----PG 485
            ....||.....|. ..|......|:..:..:.::....||.      |......:.|||    .|
Mouse   335 APRAFPNPEPCGL-NCPLIDLETPSLLHQDLAALGINDVPTRNQVVIPSCCNDKKQPGAITLMGG 398

  Fly   486 GY-----------LGQPQGQVPLPYQNGHAAQMNSLPAHLTQPTGTAPMPQPIY-TQPTPVTTQQ 538
            |.           |..||....|.|     ....|:|..:  |.||...|...: ..|...:|..
Mouse   399 GIQSLSADRNLLDLFSPQPSPGLNY-----VPQKSIPKEV--PPGTKASPGWSWEAGPLASSTAS 456

  Fly   539 QQQPL-----PQHPQQPPQQQGQQPP--QHPQNSYHIDPQSQYAQVP--PAVTQIQQPQQPPAPH 594
            |..||     |....:|    ...||  .:.:|.:.|.........|  |.|..:.......|..
Mouse   457 QNTPLAHVFVPLESVKP----SSLPPIVVYDRNGFRILLHFSQTGAPGHPDVKVLLLTMMSTATQ 517

  Fly   595 AYMSPQHQQAPPPQ---GYQPGPN----LYGPNGSPAVVNPQSYMSPQQQQQQHPPPHDQFSQLH 652
            .......|.|.|..   ..||..:    .:.|...|||::....:.         .||.:..:|.
Mouse   518 PVWDVMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQTLLLD---------NPHKEPIRLR 573

  Fly   653 QQMAAMSMAGGPPVGAPG 670
            .::....  ||.|....|
Mouse   574 YKLTFNQ--GGQPFSEVG 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 35/152 (23%)
SH3_STAM 235..288 CDD:212754 9/52 (17%)
GAT 340..412 CDD:281166 16/91 (18%)
Gga2NP_083034.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
VHS_GGA2 29..166 CDD:340807 35/162 (22%)
GGA_N-GAT 187..226 CDD:375735 11/79 (14%)
GAT_SF 229..317 CDD:383514 19/106 (18%)
Unstructured hinge 318..473 37/162 (23%)
Alpha_adaptinC2 481..595 CDD:197886 22/120 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831191
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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