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Protein Alignment Stam and Stam2

DIOPT Version :9

Sequence 1:	NP_477448.1	Gene:	Stam / 34505	FlyBaseID:	FBgn0027363	Length:	689	Species:	Drosophila melanogaster
Sequence 2:	NP_001012085.1	Gene:	Stam2 / 311030	RGDID:	1311497	Length:	523	Species:	Rattus norvegicus

Alignment Length:	603	Identity:	226/603 - (37%)
Similarity:	308/603 - (51%)	Gaps:	126/603 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 SSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHTDPHVVMQAITLLD 71
            ::||:.||||||:|.||.::||||:|:||:|.:.|..|||||||:|:|:.|..|||.:||:|||.
  Rat     6 ANPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLG 70

  Fly    72 ALSNNCGKPLHLEVASRDFETEFRRLLA-KAQPKVSLKMRQVLKNWAENDYKNDRELDLIPALYA 135
            |...||||..||||.||||.||.|.::. ||.|||..|::.::..|:| :::.|.:..||.|...
  Rat    71 ACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE-EFQKDPQFSLISATIK 134

  Fly   136 KLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKTGSVAS 200
            .:::||..|.:.|.:|....|:..|:|.|:       :|::||||||||||:|.|
  Rat   135 AMKEEGVTFPSAGSQTVSAAAKNGASLNKN-------KEDEDIAKAIELSLQEQK---------- 182

  Fly   201 TGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFAGEIIHVLDDS 265
                ..||.       |.:..|.|| |.......|:|||||||||.|:|||||..||||.|||||
  Rat   183 ----QQYPE-------TKALCPPAE-SQLSNKVARRVRALYDFEAVEDNELTFKHGEIITVLDDS 235

  Fly   266 DPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTEAAAAA 330
            |.|||:|.|.||.|||||:|||.|||.:.|...:::.:         .:|......:|:|
  Rat   236 DANWWEGENHRGAGLFPSSFVTTDLSTEVEAATVDKSN---------VIDDDVEEIKKSE----- 286

  Fly   331 AAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELERVDRKHAQLTQ 395
              .:||.|||.|:||.|.:|...:|:||..||.::|.||....||||:||.:||.:||:|::|::
  Rat   287 --PEPVYIDEGKMDRALQILQSIDPKDPKPDSQDLLDLEDICQQMGPMIDEKLEEIDRRHSELSE 349

  Fly   396 LSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAGGFPPAQNYPG 460
            |:..:::|:.||:.|:.:                             ||.|..         |..
  Rat   350 LNVKVLEALELYNKLVNE-----------------------------APMYSV---------YSK 376

  Fly   461 MHSMPYGPVPN--PPTSAPSQAPGAPGGYLGQPQGQVPL-------PYQNGHA----AQMNSLPA 512
            :|..||.....  |..:.|.|:.|  |.|||....|||:       |...|.:    ..|||:.|
  Rat   377 LHPAPYSATAAGVPVQTYPVQSHG--GNYLGHGIHQVPVAQSYNLGPDPMGSSRSLPPNMNSVTA 439

  Fly   513 HLTQP----TGTAPMPQPIY-TQP------------TPV--------TTQQQQQPLPQHPQQPPQ 552
            |..||    ||...:..|.| ||.            ||.        :.|.....|||....|..
  Rat   440 HTIQPPYLSTGQDAVSNPSYMTQSSHLQAAAGTAAYTPAMGVSADLSSFQSTASGLPQLAGFPVA 504

  Fly   553 QQGQQPPQHPQNSYHIDP 570
            ......|| ||.|||..|
  Rat   505 VPVPPAPQ-PQASYHQQP 521

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.