DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and Gga3

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_766636.2 Gene:Gga3 / 260302 MGIID:2384159 Length:718 Species:Mus musculus


Alignment Length:772 Identity:156/772 - (20%)
Similarity:245/772 - (31%) Gaps:289/772 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQSSPFDADVEKATSETNTNDNWSLILDVCDKVT---TNPRLAKDCLKAVMRRMGHTDPHVVMQA 66
            |:|  .::.:.|||:.:|..::|..|:..||::.   ..|::|   ::.:..::........:||
Mouse     6 GES--LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIA---VRLLAHKIQSPQEWEAVQA 65

  Fly    67 ITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLIP 131
            :|:|:|...|||:.||.||....|..|   |:....||.                          
Mouse    66 LTVLEACMKNCGRRLHNEVGKFRFLNE---LIKVVSPKY-------------------------- 101

  Fly   132 ALYAKLRQEGYDFKNLGDKTSKTVAEK--------AAALPKDPNVVSSQQEEDDIAKAIELSLKE 188
                           |||:.|:.|..|        ..|||          ||..|..|..:..::
Mouse   102 ---------------LGDRVSEKVKTKVIELLFSWTLALP----------EEAKIKDAYHMLKRQ 141

  Fly   189 NKGSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTF 253
                         |...:.|.:            ..:.:..|:|.||....::|.|  |:::|  
Mouse   142 -------------GIVQSDPPI------------PMDRTLIPSPPPRPKNPVFDDE--EKSKL-- 177

  Fly   254 FAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAA 318
                :..:|...:|:                    ||.      :.|:..||.            
Mouse   178 ----LARLLKSKNPD--------------------DLQ------EANRLIKSM------------ 200

  Fly   319 ALQQKTEAAAAAAAAQPVEIDESKIDRL---LHLLHEAN-------------PEDPSQDSDEMLQ 367
                             |:.||::|.::   ||.|.|.|             .::.|.|:|:.|.
Mouse   201 -----------------VKEDEARIQKVTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKELM 248

  Fly   368 LEQEVHQMGPLID-------------AELERVDRKHAQLTQLSSDLVDAINLYHTLMRDDRAAAG 419
            .|        |.|             :|.|..|.....:.|.|.:|...||.|.|:: :.:...|
Mouse   249 KE--------LFDRCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTII-EGQIVNG 304

  Fly   420 HFAAAAGGFMP-----GLAGFPGA----ALYGAPGYPAAGGFPPAQNYPGMHSMPYGPVPNPPTS 475
            ....:.   ||     ...|..||    |...||...:....||....|   .:|    |.|.||
Mouse   305 EVTTST---MPDSEGNSHCGNQGALIDLAELDAPSNSSPALAPPTSGIP---ILP----PPPQTS 359

  Fly   476 AP------SQAPGAPGG---------------YLGQPQGQVPLPYQNGHAAQ----MNSLPAHL- 514
            .|      |||...||.               .||........|.::..::|    .|..|:.| 
Mouse   360 GPPRSRSSSQAEAPPGSDSTNNALSLLDEELLCLGLTDPAPTAPKESPGSSQWHLFQNEPPSDLD 424

  Fly   515 ---TQPTGTAPMPQPIYTQPTPVTTQQQQQ-------PLPQHPQQPPQ--------QQGQQP--- 558
               .:|...|..|......|.||:|....|       |.|..|...|.        ..|..|   
Mouse   425 FFSPRPVPAASCPSDGPQLPPPVSTSSMSQAPLPAAFPAPVVPASAPTHSTGSFMFSSGPAPALA 489

  Fly   559 -------PQHPQN--SYHIDPQSQYAQVPPAVTQIQQPQQ--PPAPHAY-MSPQHQQAPPPQGYQ 611
                   |::|.:  |:.:|...|..:.....:.:.:|..  .|.|.|. :.|....|.|...:.
Mouse   490 PKAEPKGPEYPSSSTSHRLDALDQLLEEAKVTSGLVKPVSCFSPGPTASPLLPASAPARPLLPFS 554

  Fly   612 PGPNLYGPNGSPAVVNPQSYMSPQQQQQQHPPPHDQFSQLHQQMAAMSMAGGPPVGA 668
            .||      |||..   ||..|||:      .|....:.:|..:.::..:...||.|
Mouse   555 TGP------GSPLF---QSQGSPQK------GPELSLASVHVPLESIKPSSALPVTA 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 31/146 (21%)
SH3_STAM 235..288 CDD:212754 7/52 (13%)
GAT 340..412 CDD:281166 24/100 (24%)
Gga3NP_766636.2 VHS_GGA 8..146 CDD:239624 42/209 (20%)
GAT_GGA3 213..299 CDD:260098 22/94 (23%)
Unstructured hinge 299..588 68/313 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..381 16/53 (30%)
Autoinhibitory. /evidence=ECO:0000250 387..391 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 395..455 12/59 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 477..506 4/28 (14%)
Alpha_adaptinC2 596..710 CDD:197886 1/1 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831188
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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