DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and gga21

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_593008.1 Gene:gga21 / 2541469 PomBaseID:SPAC1F3.05 Length:510 Species:Schizosaccharomyces pombe


Alignment Length:374 Identity:79/374 - (21%)
Similarity:143/374 - (38%) Gaps:79/374 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VEKATSETNTNDNWSLILDVCD----KVTTNPRLAKDCLKAVMRRMGHTDPHVVMQAITLLDALS 74
            ::|||.:.|...|.:|.:::.|    |....||   :....:::|:...:|.|...|:.|||...
pombe    11 IDKATDQFNLEPNLALNIEIADLINEKKGNTPR---EAALLILKRVNSANPTVSYLALHLLDICV 72

  Fly    75 NNCGKPLHLEVASRD----FETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLIPALYA 135
            .|||.|.|.::||.:    |.:.|.........|:..||.::|:.|.....||:|..:....:: 
pombe    73 KNCGYPFHFQIASEEFLNGFVSRFPNHPISRMNKIQSKMLEMLEEWNYMLCKNNRHREDFSRIH- 136

  Fly   136 KLRQ----EGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQE---EDDIAKAIELSLKENKGSP 193
            .:|:    .||.|        ..|.|.:.|:.|..|.:.|.||   ||..|...:|.....:|:|
pombe   137 DIRELMAFRGYKF--------PAVDEDSIAVMKPNNSLRSAQELAREDLEAHKAKLQELLRRGTP 193

  Fly   194 KTGSVAS------TGTASAYPSLYPSFAG-----------------TGSSAPSAEASSAPAPEPR 235
            ...:.|:      .|........|.:.|.                 ...:....|.:.|.|.|..
pombe   194 MDLAEANALMKVIAGYDEENTEDYSALAAADLESIRSKALRVKQFLVNQTVSLEEGTLADAVESL 258

  Fly   236 KVRALYDFEAA----EENELTFFAGE-------IIHVLDDSDPNWWKGYNQRGEGLFPSNFVTAD 289
            ||   |..:.|    ||||..::..:       :|:|:::..               .|:.:.:.
pombe   259 KV---YQTKIARILREENEDEYYVQKLLSLNDLLINVIEECS---------------NSDLIHSG 305

  Fly   290 LSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTEAAAAAAAAQPVEI 338
            .:|...:.::.:.|...::...::..|...|.:.||..|..:.:.|..:
pombe   306 TNVVSSQPNVVESHVPPSSNDTKQESSLIDLMKLTEEPAVPSPSLPTNV 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 35/138 (25%)
SH3_STAM 235..288 CDD:212754 11/63 (17%)
GAT_STAM 337..413 CDD:410593 0/2 (0%)
PHA03247 <436..526 CDD:223021
gga21NP_593008.1 VHS_GGA_fungi 7..145 CDD:340795 35/137 (26%)
GAT_GGA_fungi 216..304 CDD:410583 17/105 (16%)
Alpha_adaptinC2 398..507 CDD:197886
Blue background indicates that the domain is not in the aligned region.

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