DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and hse1

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_595425.1 Gene:hse1 / 2540055 PomBaseID:SPBC1734.08 Length:373 Species:Schizosaccharomyces pombe


Alignment Length:430 Identity:113/430 - (26%)
Similarity:196/430 - (45%) Gaps:73/430 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQSSPFDADVEKATSETNTNDNWSLILDVCDKV-TTNPRLAKDCLKAVMRRMGHTDPHVVMQAIT 68
            |:.:..:..:.:||.|.||.:.|.:|:|.||:: :|:..:.::.:|.:.:|:...:.::.:.|:|
pombe     4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALT 68

  Fly    69 LLDALSNNCGKPLHLEVASRDFETEFRRLLAKA--QPKVSLKMRQVLKNWAENDYKNDRELDLIP 131
            |.||:..||...:..|::||.|.....::.:.:  ..:|..::..::..||| ..|.|..:.|:.
pombe    69 LTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAE-IMKKDPNMSLMQ 132

  Fly   132 ALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDP-----NVVSSQQEEDDIAKAIELSLKENKG 191
            .:..|:|:  .|..:|             ..||.|     |.:..::||:::..|:.|||.|:..
pombe   133 DICEKIRK--LDIVDL-------------RAPKKPEKEAMNELELKREEEELQYALALSLSESTA 182

  Fly   192 -SPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFA 255
             |.|..:..||.......:         :....:..:::||....:|||||||.|.|:.||:|..
pombe   183 QSNKVENPQSTKDEPLQKT---------NQRQESNLATSPASTVSRVRALYDFAATEQGELSFKK 238

  Fly   256 GEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAAL 320
            |:||.||:....:||||..:...|:||.|:|  ...|:|   .|.||.:||... |:..|   ||
pombe   239 GDIILVLESVYKDWWKGSCKNAVGIFPVNYV--QRVVEP---TIEQQRQSAHME-QQVFD---AL 294

  Fly   321 QQKTEAAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELER 385
            .|                    ||.||..|...:|:....|:     |:.:.|.|..| ..:|.|
pombe   295 PQ--------------------IDELLDTLSTTSPDAADDDA-----LQGKYHAMIAL-RPKLVR 333

  Fly   386 VDRKHA----QLTQLSSDLVDAINLYHTLMRDDRAAAGHF 421
            :..|:|    :|..|:..|:.|...|..|.....:...:|
pombe   334 LIEKYASQKEELMDLNERLLVARRDYEKLYEQSMSEMRNF 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 33/133 (25%)
SH3_STAM 235..288 CDD:212754 26/52 (50%)
GAT_STAM 337..413 CDD:410593 21/79 (27%)
PHA03247 <436..526 CDD:223021
hse1NP_595425.1 VHS_HSE1 9..140 CDD:340775 32/131 (24%)
SH3_GRB2_like_C 219..271 CDD:212739 26/53 (49%)
GAT_Hse1 287..367 CDD:410591 26/109 (24%)
Blue background indicates that the domain is not in the aligned region.

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