DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and GGA3

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_016879874.1 Gene:GGA3 / 23163 HGNCID:17079 Length:733 Species:Homo sapiens


Alignment Length:766 Identity:153/766 - (19%)
Similarity:242/766 - (31%) Gaps:272/766 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQSSPFDADVEKATSETNTNDNWSLILDVCDKVT---TNPRLAKDCLKAVMRRMGHTDPHVVMQA 66
            |:|  .::.:.|||:.:|..::|..|:..||::.   ..|::|   ::.:..::........:||
Human     6 GES--LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIA---VRLLAHKIQSPQEWEALQA 65

  Fly    67 ITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLIP 131
            :|:|:|...|||:..|.||....|..|   |:....||.                          
Human    66 LTVLEACMKNCGRRFHNEVGKFRFLNE---LIKVVSPKY-------------------------- 101

  Fly   132 ALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKTG 196
                           |||:.|:.|.                      .|.|||........|:..
Human   102 ---------------LGDRVSEKVK----------------------TKVIELLYSWTMALPEEA 129

  Fly   197 SVASTGTASAYPSLYPSFAGTGSSAP--SAEASSAPAPEPRKVRALYDFEAAEENELTFFAGEII 259
            .:     ..||..|  ...|...|.|  ..:.:..|:|.||....::|.|  |:::|      :.
Human   130 KI-----KDAYHML--KRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFDDE--EKSKL------LA 179

  Fly   260 HVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKT 324
            .:|...:|:                    ||.      :.|:..||.                  
Human   180 KLLKSKNPD--------------------DLQ------EANKLIKSM------------------ 200

  Fly   325 EAAAAAAAAQPVEIDESKIDRL---LHLLHEAN-------------PEDPSQDSDEML------Q 367
                       |:.||::|.::   ||.|.|.|             .::.|.|.|..|      |
Human   201 -----------VKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQ 254

  Fly   368 LEQEVHQMGPLIDAELERVDRKHAQLTQLSSDLVDAINLYHTLMRDD-----------RAAAGHF 421
            .|.:...:..|. :|.|..|.....:.|.|.:|...||.|.|::...           ..:.|:.
Human   255 CENKRRTLFKLA-SETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPDSEGNS 318

  Fly   422 AAAAGGFMPGLAGF----------------PGAALYGAPGYPAAGGFPPAQNYPGMHSMPYG--- 467
            ..:..|.:..||..                |.:.:...|..|.|.| ||............|   
Human   319 QCSNQGTLIDLAELDTTNSLSSVLAPAPTPPSSGIPILPPPPQASG-PPRSRSSSQAEATLGPSS 382

  Fly   468 -------------------PVPNPPTSAPSQAPGAPGGYLGQPQGQVPLPY---QNGHAAQMNSL 510
                               |.||.|   |.::.|....:|.|.: |..|.:   :.|.|| ..:.
Human   383 TSNALSWLDEELLCLGLADPAPNVP---PKESAGNSQWHLLQRE-QSDLDFFSPRPGTAA-CGAS 442

  Fly   511 PAHLTQP------TGTAPMPQPIYTQPTPVTTQQQQQPLPQ----------HPQQPPQQQGQQPP 559
            .|.|.||      :..||:|.|.   |.||.  ....|.|.          .|...|:.:...|.
Human   443 DAPLLQPSAPSSSSSQAPLPPPF---PAPVV--PASVPAPSAGSSLFSTGVAPALAPKVEPAVPG 502

  Fly   560 QHP---QNS--YHIDPQSQYAQVPPAVTQIQQPQQPPAPHAYMSPQHQQAPPPQGYQPGPNLYGP 619
            .|.   .||  :|:|...|..:.....:.:.:|...|     :.|....|.|...:..||     
Human   503 HHGLALGNSALHHLDALDQLLEEAKVTSGLVKPTTSP-----LIPTTTPARPLLPFSTGP----- 557

  Fly   620 NGSPAVVNPQSYMSPQQQQQQHPP--PHDQFSQLHQQMAAMSMAGGPPVGA 668
             ||| :..|.|:     |.|..||  |....:.:|..:.::..:...||.|
Human   558 -GSP-LFQPLSF-----QSQGSPPKGPELSLASIHVPLESIKPSSALPVTA 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 30/146 (21%)
SH3_STAM 235..288 CDD:212754 7/52 (13%)
GAT 340..412 CDD:281166 24/93 (26%)
GGA3XP_016879874.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141246
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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