DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and Tom1

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001129731.1 Gene:Tom1 / 21968 MGIID:1338026 Length:516 Species:Mus musculus


Alignment Length:440 Identity:97/440 - (22%)
Similarity:174/440 - (39%) Gaps:127/440 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRR-MGHTDPHVVMQAITLL 70
            |||....:||||..:..:::|:|.:::||.:.......||..:||.:| ||:.:.|.||.|:|:|
Mouse    10 SSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVL 74

  Fly    71 DALSNNCGKPLHLEVASRDF--ETEFRRLLAKAQPK--VSLKMRQVLKNWAENDYKNDRELDLIP 131
            :....|||...|:.||::||  ....|.:|.|..|.  |..|:..::::||: .:::..:|..:.
Mouse    75 ETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWAD-AFRSSPDLTGVV 138

  Fly   132 ALYAKLRQEGYDFKNLG-DKTS------KTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKEN 189
            |:|..||::|.:|.... |..|      :||..  :..|...|.|||                  
Mouse   139 AVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFN--SETPSRQNSVSS------------------ 183

  Fly   190 KGSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFF 254
             .:.:.|.::...|....|::.|             ..|...|.|.::..|       .:||...
Mouse   184 -NTSQRGDLSQHATPLPTPAVLP-------------GDSPITPTPEQIGKL-------RSELEMV 227

  Fly   255 AGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAA 319
            :|.:            :..::....|.|:....|||.:..|   :|:              :..|
Mouse   228 SGNV------------RVMSEMLTELVPTQVEPADLELLQE---LNR--------------TCRA 263

  Fly   320 LQQKTEAAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELE 384
            :||                      |:|.|:...:.|   |.::|:|.:...::.    :....|
Mouse   264 MQQ----------------------RILELIPRISNE---QLTEELLMINDNLNN----VFLRHE 299

  Fly   385 RVDR-------KHAQLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGG 427
            |.:|       |.:...:|::||:|        |..|.||..:.::...|
Mouse   300 RFERFRTGQTAKASSEAELATDLID--------MGPDPAATNNLSSQLAG 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 42/135 (31%)
SH3_STAM 235..288 CDD:212754 6/52 (12%)
GAT_STAM 337..413 CDD:410593 16/82 (20%)
PHA03247 <436..526 CDD:223021
Tom1NP_001129731.1 VHS_Tom1 12..148 CDD:340792 43/136 (32%)
GAT_TOM1 214..308 CDD:260094 25/158 (16%)
Blue background indicates that the domain is not in the aligned region.

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