DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and Stam

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_035614.1 Gene:Stam / 20844 MGIID:1329014 Length:548 Species:Mus musculus


Alignment Length:595 Identity:233/595 - (39%)
Similarity:321/595 - (53%) Gaps:82/595 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGIFGQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHTDPHVVMQ 65
            |.:|. ::|||.||||||||.||.::|.||||:||||..:....||||:::|||:.|.||||.||
Mouse     1 MPLFA-TNPFDQDVEKATSELNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQ 64

  Fly    66 AITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLI 130
            |:|||.|..:||||..||||.||||.:|...:|.|..|||..|::.::..|.: ::|||.:|.||
Mouse    65 ALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD-EFKNDPQLSLI 128

  Fly   131 PALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKT 195
            .|:...|:::|..|..:|.:.::......|.:.|||..|::::||:|:||||||||||.:   :.
Mouse   129 SAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVATKKEEEDLAKAIELSLKEQR---QQ 190

  Fly   196 GSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFAGEIIH 260
            .:..||        ||||         ::...:....|.|||||:|||||||:|||||.|||||.
Mouse   191 SAPVST--------LYPS---------TSNLLTNHQHEGRKVRAVYDFEAAEDNELTFKAGEIIT 238

  Fly   261 VLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTE 325
            ||||||||||||...:|.||||||||||||:.:||.:...::              ........:
Mouse   239 VLDDSDPNWWKGETHQGVGLFPSNFVTADLTAEPEMIKTEKK--------------TVQFNDDVQ 289

  Fly   326 AAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELERVDRKH 390
            ........:|..|||.|:|:||.:|...:|.|...|..|:|.||...||||||||.:||.:||||
Mouse   290 IETIEPEPEPAFIDEDKMDQLLQMLQSTDPSDNQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKH 354

  Fly   391 AQLTQLSSDLVDAINLYHTLMRDD---------RAAAGHFAAAAGGFMPGLAGFPGAALYGAPGY 446
            ::|::|:..:::|::||..||.:|         ::...:..::|   :.....:||.|..|.  |
Mouse   355 SELSELNVKVMEALSLYTKLMNEDPMYSMYAKLQSQQYYLQSSA---VSASQVYPGPAQSGT--Y 414

  Fly   447 PAAG----------GFPPAQNYPGMHSMPYGPVPNPPTSA-PSQAPGA--PGGYLGQPQGQVPLP 498
            ..||          ..||.|    :.|:..|.||:....| |||...|  |...:...||. ..|
Mouse   415 LVAGSAQMTHLQSYSLPPEQ----LSSISQGAVPSSANQALPSQQTQASYPNAMVSSVQGN-SYP 474

  Fly   499 YQNGHAAQMNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQQQP-LPQHPQQP------PQQQGQ 556
            .|    |.:.|.||........|.:|.|:   |..||..|...| :.|.|...      ||..|.
Mouse   475 SQ----ASIYSPPAAAAAAAAAAVVPVPV---PADVTIYQNAGPTMSQVPNYTLTSSTLPQTGGS 532

  Fly   557 QPPQHPQNSY 566
            |.|..||.:|
Mouse   533 QQPPQPQQAY 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 71/143 (50%)
SH3_STAM 235..288 CDD:212754 43/52 (83%)
GAT 340..412 CDD:281166 33/71 (46%)
StamNP_035614.1 VHS_STAM 9..142 CDD:239625 69/132 (52%)
SH3_STAM1 213..267 CDD:212897 29/53 (55%)
GAT 306..377 CDD:281166 19/70 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 436..458 10/31 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 517..548 9/31 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831183
Domainoid 1 1.000 148 1.000 Domainoid score I4445
eggNOG 1 0.900 - - E1_KOG2199
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 364 1.000 Inparanoid score I2155
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52024
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002740
OrthoInspector 1 1.000 - - otm43863
orthoMCL 1 0.900 - - OOG6_103033
Panther 1 1.100 - - O PTHR45929
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R571
SonicParanoid 1 1.000 - - X1427
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.