DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and Stam

DIOPT Version :10

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001408022.1 Gene:Stam / 20844 MGIID:1329014 Length:555 Species:Mus musculus


Alignment Length:602 Identity:233/602 - (38%)
Similarity:321/602 - (53%) Gaps:89/602 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGIFGQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHTDPHVVMQ 65
            |.:|. ::|||.||||||||.||.::|.||||:||||..:....||||:::|||:.|.||||.||
Mouse     1 MPLFA-TNPFDQDVEKATSELNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQ 64

  Fly    66 AITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPKVSLKMRQVLKNWAENDYKNDRELDLI 130
            |:|||.|..:||||..||||.||||.:|...:|.|..|||..|::.::..|.: ::|||.:|.||
Mouse    65 ALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD-EFKNDPQLSLI 128

  Fly   131 PALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKT 195
            .|:...|:::|..|..:|.:.::......|.:.|||..|::::||:|:||||||||||.:   :.
Mouse   129 SAMIKNLKEQGVTFPAIGSQAAEQAKASPALVAKDPGTVATKKEEEDLAKAIELSLKEQR---QQ 190

  Fly   196 GSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFAGEIIH 260
            .:..||        ||||         ::...:....|.|||||:|||||||:|||||.|||||.
Mouse   191 SAPVST--------LYPS---------TSNLLTNHQHEGRKVRAVYDFEAAEDNELTFKAGEIIT 238

  Fly   261 VLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQKTE 325
            ||||||||||||...:|.||||||||||||:.:||.:...::              ........:
Mouse   239 VLDDSDPNWWKGETHQGVGLFPSNFVTADLTAEPEMIKTEKK--------------TVQFNDDVQ 289

  Fly   326 AAAAAAAAQPVEIDESKIDRLLHLLHEANPEDPSQDSDEMLQLE-------QEVHQMGPLIDAEL 383
            ........:|..|||.|:|:||.:|...:|.|...|..|:|.||       ...||||||||.:|
Mouse   290 IETIEPEPEPAFIDEDKMDQLLQMLQSTDPSDNQPDLPELLHLEVYFLVILAMCHQMGPLIDEKL 354

  Fly   384 ERVDRKHAQLTQLSSDLVDAINLYHTLMRDD---------RAAAGHFAAAAGGFMPGLAGFPGAA 439
            |.:||||::|::|:..:::|::||..||.:|         ::...:..::|   :.....:||.|
Mouse   355 EDIDRKHSELSELNVKVMEALSLYTKLMNEDPMYSMYAKLQSQQYYLQSSA---VSASQVYPGPA 416

  Fly   440 LYGAPGYPAAG----------GFPPAQNYPGMHSMPYGPVPNPPTSA-PSQAPGA--PGGYLGQP 491
            ..|.  |..||          ..||.|    :.|:..|.||:....| |||...|  |...:...
Mouse   417 QSGT--YLVAGSAQMTHLQSYSLPPEQ----LSSISQGAVPSSANQALPSQQTQASYPNAMVSSV 475

  Fly   492 QGQVPLPYQNGHAAQMNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQQQP-LPQHPQQP----- 550
            ||. ..|.|    |.:.|.||........|.:|.|:   |..||..|...| :.|.|...     
Mouse   476 QGN-SYPSQ----ASIYSPPAAAAAAAAAAVVPVPV---PADVTIYQNAGPTMSQVPNYTLTSST 532

  Fly   551 -PQQQGQQPPQHPQNSY 566
             ||..|.|.|..||.:|
Mouse   533 LPQTGGSQQPPQPQQAY 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..141 CDD:340770 68/130 (52%)
SH3_STAM 235..288 CDD:212754 43/52 (83%)
GAT_STAM 337..413 CDD:410593 36/82 (44%)
PHA03247 <436..526 CDD:223021 30/102 (29%)
StamNP_001408022.1 VHS_STAM1 9..139 CDD:340797 69/129 (53%)
SH3_STAM1 213..267 CDD:212897 29/53 (55%)
GAT_STAM1 301..384 CDD:410594 24/89 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 443..465 7/31 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 524..555 11/37 (30%)

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