DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and C07A12.7

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_508777.1 Gene:C07A12.7 / 180723 WormBaseID:WBGene00015561 Length:437 Species:Caenorhabditis elegans


Alignment Length:445 Identity:92/445 - (20%)
Similarity:166/445 - (37%) Gaps:88/445 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FGQSSPFDADV-EKATSETNTN----DNWSLILDVCDKVTTNPRLAKDCLKAVMRRMGHT---DP 60
            |.|.:||...| .|....|:.|    :||.|.:::||.:.......:|.::|:.:|:.:.   :.
 Worm    29 FFQGNPFATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNN 93

  Fly    61 HVVMQAITLLDALSNNCGKPLHLEVASRDFETEFRRLLAKAQPK------VSLKMRQVLKNWAEN 119
            .|||..:|:|:....||....|:.|.::||..:..:|:.   ||      :..::..:::.||: 
 Worm    94 AVVMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIG---PKFDAPQIIQERVLSLIQAWAD- 154

  Fly   120 DYKNDRELDLIPALYAKLRQEGYDFKNLG-DKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIE 183
            .::.|..|..:...|..|:.:|.:|.... |..:.....|.....:.|......|::.:      
 Worm   155 AFRGDPTLAGVVQSYDDLKSKGVEFPAADLDTLAPIKTPKRTVFNQPPPATLDDQQQQN------ 213

  Fly   184 LSLKENKGSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEE 248
               ::.:..|:.|   .....|.|..|.....|       .|..||...:..|:||  |.:...:
 Worm   214 ---QQQQQQPQQG---QQNPQSTYDVLTIREQG-------QEPISATPAQLTKLRA--DLDVVNQ 263

  Fly   249 NELTF------------FAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQ 301
            |...|            .|.|:..:.|.:|.  .:...||...|.  .:|:.| .|..|.|.:|.
 Worm   264 NIKVFRETLTDVVPRKETADELQLLSDLNDT--CRHMQQRVLDLI--RYVSND-EVTYELLMVND 323

  Fly   302 QHKSA---------------AAAGQREL----DSAAALQQKTEAAAAAAAAQPVEIDESKIDRLL 347
            ...|.               .||..|:|    |..:...|.:.....||:.:|.....:..|   
 Worm   324 SLNSVFEKYDRFVSNRDGEKQAAEARDLIDMGDGKSLGDQLSALKVTAASGEPSSSASTSQD--- 385

  Fly   348 HLLHEANPEDPSQD------SDEMLQLEQEVHQMGPLIDAELERVDRKHAQLTQL 396
              .::||.| |..|      ....|..|.|..:|...::.:.|:..::..:..:|
 Worm   386 --AYKANAE-PQTDVGLAAAVSNKLPTEHEAAEMEKWLENQSEKKTKEQEENDKL 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 36/158 (23%)
SH3_STAM 235..288 CDD:212754 14/64 (22%)
GAT 340..412 CDD:281166 12/63 (19%)
C07A12.7NP_508777.1 VHS_Tom1_like 38..176 CDD:340768 32/141 (23%)
GAT_TOM1_like 251..336 CDD:260091 20/91 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1213216at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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