DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Stam and tom1l2

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_009298168.1 Gene:tom1l2 / 100535615 -ID:- Length:551 Species:Danio rerio


Alignment Length:491 Identity:104/491 - (21%)
Similarity:182/491 - (37%) Gaps:140/491 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRM-GHTDPHVVMQAITLL 70
            |:|....:||||..:..|::|:|.:::||.:.......:|.::||.:|: |:.:...||.|:|:|
Zfish    10 STPVGQCIEKATDGSLQNEDWTLNMEICDIINETEEGPRDAMRAVKKRLNGNRNFREVMLALTVL 74

  Fly    71 DALSNNCGKPLHLEVASRDF-ETEFRRLL-------AKAQPKVSLKMRQVLKNWAENDYKNDREL 127
            :....|||...|:.||:||| |....:::       |.||.||    ..:::.||: .:::..:|
Zfish    75 ETCVKNCGHRFHVHVANRDFIEGVMVKIISPKNNPPAIAQDKV----LALIQAWAD-AFRSSPDL 134

  Fly   128 DLIPALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGS 192
            ..:..:|.:|:::|.:|         .:|:..|..|..                          :
Zfish   135 TGVVHIYEELKRKGVEF---------PMADLDALSPIH--------------------------T 164

  Fly   193 PKTGSVASTGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENELTFFAGE 257
            |:.|          .|.:.|   ||......|:..:||...|:...|     ||.....|     
Zfish   165 PQRG----------VPEVDP---GTHRYKAPAQTHTAPERSPKPAAA-----AAPVFNNT----- 206

  Fly   258 IIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDINQQHKSAAAAGQRELDSAAALQQ 322
              |:...:.|                      :|.:||::          |..:.|||       
Zfish   207 --HIQTAAGP----------------------ISANPEQI----------ARLRSELD------- 230

  Fly   323 KTEAAAAAAAAQPVEIDESKIDRLLHLLHEANP-EDPSQDSDEMLQLEQEVHQMGPLIDAELERV 386
                           |....|..:..:|.|..| ::.:.|.:.:.:|.:....|...|...:.||
Zfish   231 ---------------IVRGNIKVMSEMLTEMVPGQEDASDLELLQELNRTCRAMQHRIVELISRV 280

  Fly   387 DRKHA--QLTQLSSDLVDAINLYHTLMRDDRAAAGHFAAAAGGFMPGL--AGFPGAALYGAPGYP 447
            ..:..  :|...:.||   .|::....|.:|...|. ||...|....|  |......:...||.|
Zfish   281 SNEEVTEELLHANDDL---NNMFLRYERYERYRVGR-AAQNNGLREVLNEASEEDNLIDLGPGSP 341

  Fly   448 AAGGFPPAQNYPGMHSMPYGPVPNPPTSAPSQAPGA 483
            |.  ..|..:....|:..:..:..|| :||:.|..|
Zfish   342 AV--VTPRISTTPTHTHTHTHMQTPP-AAPAAADTA 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 41/152 (27%)
SH3_STAM 235..288 CDD:212754 6/52 (12%)
GAT 340..412 CDD:281166 14/74 (19%)
tom1l2XP_009298168.1 VHS_Tom1 12..152 CDD:239623 42/153 (27%)
GAT_SF 219..310 CDD:296121 23/125 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574151
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1213216at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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