DRSC/TRiP Functional Genomics Resources

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Protein Alignment Stam and tom1l2

DIOPT Version :9

Sequence 1:NP_477448.1 Gene:Stam / 34505 FlyBaseID:FBgn0027363 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_004918135.1 Gene:tom1l2 / 100485384 XenbaseID:XB-GENE-1012167 Length:530 Species:Xenopus tropicalis


Alignment Length:402 Identity:82/402 - (20%)
Similarity:157/402 - (39%) Gaps:81/402 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKAVMRRM-GHTDPHVVMQAITLL 70
            |:|....:||||..:..:::|:|.:::||.:.......||.::|:.:|: |:.:...||.|:|:|
 Frog    10 STPVGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVL 74

  Fly    71 DALSNNCGKPLHLEVASRDFETEFRRLLAK-AQPK------VSLKMRQVLKNWAENDYKNDRELD 128
            :....|||...|:.|..|||   ...:|.| ..||      |..|:..:::.||: .:::..:|.
 Frog    75 ETCVKNCGHRFHVLVTHRDF---IDGILVKIISPKNSPPTIVQDKVLALIQAWAD-AFRSSPDLT 135

  Fly   129 LIPALYAKLRQEGYDFKNLGDKTSKTVAEKAAALPK-DP--NVVSSQQEEDDIAKAIELSLKENK 190
            .:..:|.:|:::|.:|..........:.....::|: ||  |:.:||.::    :....:...:|
 Frog   136 GVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQQ----RGSFSNFSNSK 196

  Fly   191 GSPKTGSVASTGTASAYPSLYPSFAGTGSSAPSAE----------------------ASSAPAPE 233
            .||.....|..|.        |:..|...||.|.:                      ....|..|
 Frog   197 SSPTPPYTAPGGP--------PANMGGPISANSEQIGRLRSELDIVRGNIKVMSEMLTEMTPGQE 253

  Fly   234 P-----------RKVRALYD-----FEAAEENELTFFAGEIIHVLDDSDPNWWKGYN-----QRG 277
            .           |..|::.:     .......|:|   .|::||.||.: |.:..|.     :.|
 Frog   254 DASDLELLQDLNRTCRSMQERIVELISRVSNEEVT---EELLHVNDDLN-NVFLRYERFERYRSG 314

  Fly   278 EGLFPSNFVTADLSVDPERLDINQQHKS------AAAAGQRELDSAAALQQKTEAAAAAAAAQPV 336
            .....:|.|.::::.| ..:|:.....:      |..|..........|...:.:.::..:|.|.
 Frog   315 RSAQNTNGVLSEVTED-NLIDLGPGSPAVVSPMLANTAPSNLSSQLGGLDMGSNSVSSTLSALPT 378

  Fly   337 EIDESKIDRLLH 348
            ...:...|...|
 Frog   379 TKPQDDFDMFAH 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StamNP_477448.1 VHS_STAM 10..154 CDD:239625 39/151 (26%)
SH3_STAM 235..288 CDD:212754 14/62 (23%)
GAT 340..412 CDD:281166 2/9 (22%)
tom1l2XP_004918135.1 VHS_Tom1 12..152 CDD:239623 39/143 (27%)
GAT_TM1L2 221..312 CDD:260096 14/94 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1213216at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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